Detailed information    

insolico Bioinformatically predicted

Overview

Name   cclA/cilC   Type   Machinery gene
Locus tag   CSB63_RS03820 Genome accession   NZ_CP089060
Coordinates   687587..688234 (-) Length   215 a.a.
NCBI ID   WP_134973181.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain CH8     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 682587..693234
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CSB63_RS03805 (CSB63_0744) holA 684335..685369 (+) 1035 WP_002946639.1 DNA polymerase III subunit delta -
  CSB63_RS03810 (CSB63_0745) sodA 685464..686069 (+) 606 WP_011680996.1 superoxide dismutase SodA -
  CSB63_RS03815 (CSB63_0746) - 686243..687547 (+) 1305 WP_246752692.1 serine hydrolase -
  CSB63_RS03820 (CSB63_0747) cclA/cilC 687587..688234 (-) 648 WP_134973181.1 prepilin peptidase Machinery gene
  CSB63_RS03825 (CSB63_0748) - 688343..688864 (+) 522 WP_065973087.1 Dps family protein -
  CSB63_RS03830 (CSB63_0749) - 688953..689390 (+) 438 WP_134973182.1 Fur family transcriptional regulator -
  CSB63_RS03835 - 689501..689707 (+) 207 WP_022096801.1 YqgQ family protein -
  CSB63_RS03840 (CSB63_0751) - 689700..690668 (+) 969 WP_082308904.1 ROK family glucokinase -
  CSB63_RS03845 (CSB63_0752) typA 690806..692656 (+) 1851 WP_014608174.1 translational GTPase TypA -
  CSB63_RS03850 (CSB63_0753) - 692676..692948 (+) 273 WP_002950398.1 DUF3165 family protein -

Sequence

Protein


Download         Length: 215 a.a.        Molecular weight: 24901.07 Da        Isoelectric Point: 8.5460

>NTDB_id=548036 CSB63_RS03820 WP_134973181.1 687587..688234(-) (cclA/cilC) [Streptococcus thermophilus strain CH8]
MLSILYFFLGTSLGSFIGLICDRFPEKSIIFPRSHCNQCGHPLRFFEMIPILSQLFLRFKCRLCQSSIPYRYLFLELFCG
GILLLYFYDYLDFGRTYLLFFSLCLTIFDLKNKSYPLLIWILGTLPLLCLGNHYLTFSLGISLAVLSYIKRLNIGEGDFL
YLASVSLIFPFSKILIAIELACSFGLMYFLVRKKPNETVAFVPFLFMSVLILTFM

Nucleotide


Download         Length: 648 bp        

>NTDB_id=548036 CSB63_RS03820 WP_134973181.1 687587..688234(-) (cclA/cilC) [Streptococcus thermophilus strain CH8]
ATGCTTAGTATTTTATATTTTTTTCTTGGTACCTCTTTAGGCTCGTTTATTGGATTGATTTGTGATCGTTTTCCTGAGAA
GTCGATTATTTTTCCTAGAAGCCATTGCAATCAGTGTGGGCATCCGTTACGTTTTTTCGAAATGATTCCGATCCTATCAC
AACTTTTCTTAAGGTTCAAATGTCGGTTATGTCAAAGCTCTATCCCATACCGTTACCTCTTCTTGGAATTGTTTTGTGGA
GGAATACTTCTTCTTTATTTCTATGACTACCTAGATTTTGGAAGAACCTATTTGCTTTTTTTCAGTCTTTGTCTAACTAT
TTTTGATTTAAAAAATAAATCATATCCCCTTCTAATTTGGATTCTTGGAACACTACCTCTCCTATGTTTGGGAAACCACT
ACCTCACTTTTAGCTTAGGAATAAGTTTAGCCGTTCTGTCATATATCAAACGTTTAAATATTGGTGAAGGTGATTTTCTC
TATTTGGCCAGTGTCTCCCTCATTTTCCCATTTTCCAAAATACTAATAGCTATTGAACTAGCTTGCTCATTTGGGCTTAT
GTACTTCCTAGTACGTAAAAAACCTAATGAAACAGTCGCTTTTGTCCCATTTCTCTTTATGAGTGTTCTAATTCTTACCT
TCATGTAA

Domains

Predicted by InterProScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(9-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cclA/cilC Streptococcus mitis SK321

40.187

99.535

0.4
  cclA/cilC Streptococcus pneumoniae TIGR4

40.187

99.535

0.4
  cclA/cilC Streptococcus mitis NCTC 12261

39.72

99.535

0.395
  cclA/cilC Streptococcus pneumoniae Rx1

39.252

99.535

0.391
  cclA/cilC Streptococcus pneumoniae D39

39.252

99.535

0.391
  cclA/cilC Streptococcus pneumoniae R6

39.252

99.535

0.391