Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   CSB63_RS01280 Genome accession   NZ_CP089060
Coordinates   227920..228516 (-) Length   198 a.a.
NCBI ID   WP_002949408.1    Uniprot ID   Q5M648
Organism   Streptococcus thermophilus strain CH8     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 222920..233516
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CSB63_RS01265 (CSB63_0222) - 223610..224050 (+) 441 WP_011225416.1 DUF805 domain-containing protein -
  CSB63_RS01270 (CSB63_0223) pepC 224152..225489 (+) 1338 WP_255135999.1 aminopeptidase C -
  CSB63_RS01275 (CSB63_0224) pbp1a 225599..227920 (-) 2322 WP_134973060.1 penicillin-binding protein PBP1A -
  CSB63_RS01280 (CSB63_0225) recU 227920..228516 (-) 597 WP_002949408.1 Holliday junction resolvase RecU Machinery gene
  CSB63_RS01285 (CSB63_0226) - 228593..229108 (+) 516 WP_134973061.1 DUF1273 domain-containing protein -
  CSB63_RS01290 (CSB63_0227) gpsB 229217..229549 (+) 333 WP_084830490.1 cell division regulator GpsB -
  CSB63_RS01300 (CSB63_0228) - 230082..231248 (+) 1167 WP_134973062.1 THUMP domain-containing class I SAM-dependent RNA methyltransferase -
  CSB63_RS01305 (CSB63_0229) - 231251..233113 (+) 1863 WP_134973063.1 cell division site-positioning protein MapZ family protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22827.38 Da        Isoelectric Point: 10.1106

>NTDB_id=548008 CSB63_RS01280 WP_002949408.1 227920..228516(-) (recU) [Streptococcus thermophilus strain CH8]
MVNYPHQISRKIAQVRTKKSNRVDFANRGMNFESAINATNDYYLSRGLAVIHKKPTPVQIVKVDYPKRSRAKIVEAYFRQ
ASTTDYSGVYKGYYIDFEAKETRQKTSMPMKNFHAHQIKHMSQVINQDGICFVLLHFSTLKETYLLPAKDLIAFYQIDKG
TKSMPLDYIKKRGYAIAESAYPQVPYLEIIEKLLGGNT

Nucleotide


Download         Length: 597 bp        

>NTDB_id=548008 CSB63_RS01280 WP_002949408.1 227920..228516(-) (recU) [Streptococcus thermophilus strain CH8]
ATGGTAAACTATCCCCATCAGATATCTCGTAAGATAGCACAAGTACGTACTAAAAAATCTAATAGAGTTGACTTTGCCAA
TCGGGGGATGAACTTTGAATCTGCTATTAATGCGACTAATGATTACTATTTGTCGCGTGGCTTAGCCGTTATTCATAAGA
AACCTACACCGGTTCAGATCGTCAAAGTCGATTATCCAAAACGCTCACGAGCAAAGATTGTAGAAGCTTACTTTAGGCAA
GCCTCAACTACTGACTACTCTGGCGTTTACAAAGGATACTATATTGATTTTGAAGCCAAAGAGACACGGCAAAAGACATC
TATGCCTATGAAAAACTTTCATGCGCATCAAATTAAGCACATGTCTCAGGTCATCAATCAAGATGGAATCTGCTTCGTGC
TACTCCACTTTTCAACGCTTAAGGAAACCTACCTTCTGCCTGCCAAAGACTTAATCGCTTTTTATCAAATTGATAAGGGG
ACAAAATCAATGCCTCTTGATTATATCAAAAAAAGAGGTTATGCAATCGCAGAATCAGCTTATCCTCAAGTTCCTTATTT
AGAGATCATTGAAAAATTATTAGGTGGTAACACATAA

Domains

Predicted by InterProScan.

Recombination protein U (RecU)

(28-190)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q5M648

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

49.754

100

0.51