Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   H020_RS0109365 Genome accession   NZ_AKVY01000001
Coordinates   1790768..1791478 (+) Length   236 a.a.
NCBI ID   WP_000760673.1    Uniprot ID   A0A0H2URH4
Organism   Streptococcus pneumoniae TIGR4     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1785768..1796478
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H020_RS0109345 - 1786309..1786557 (-) 249 WP_000364990.1 YneF family protein -
  H020_RS0109355 treC 1786813..1788438 (-) 1626 WP_000171229.1 alpha,alpha-phosphotrehalase -
  H020_RS0109360 treP 1788616..1790583 (-) 1968 WP_000514307.1 PTS system trehalose-specific EIIBC component -
  H020_RS0109365 treR 1790768..1791478 (+) 711 WP_000760673.1 trehalose operon repressor Regulator
  H020_RS13080 - 1791633..1792959 (+) 1327 Protein_1782 ISL3 family transposase -
  H020_RS0109385 - 1793034..1793960 (-) 927 WP_001291293.1 ATP-binding cassette domain-containing protein -
  H020_RS0109390 amiE 1793971..1795038 (-) 1068 WP_000159554.1 ABC transporter ATP-binding protein Regulator
  H020_RS0109395 amiD 1795047..1795973 (-) 927 WP_000103700.1 oligopeptide ABC transporter permease OppC Regulator

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 27607.78 Da        Isoelectric Point: 8.9698

>NTDB_id=54711 H020_RS0109365 WP_000760673.1 1790768..1791478(+) (treR) [Streptococcus pneumoniae TIGR4]
MKKYQQLFKQIQETIQNETYAVGDFLPSEHDLMEQYQVSRDTVRKALSLLQEEGLIKKIRGQGSQVVKEETVNFPVSNLT
SYQELVKELGLRSKTNVVSLDKIIIDKKSSLITGFPEFRMVWKVVRQRVVDDLVSVLDTDYLDMELIPNLTRQIAEQSIY
SYIENGLKLLIDYAQKEITIDHSSDRDKILMDIGKDPYVVSIKSKVYLQDGRQFQFTESRHKLEKFRFVDFAKRKK

Nucleotide


Download         Length: 711 bp        

>NTDB_id=54711 H020_RS0109365 WP_000760673.1 1790768..1791478(+) (treR) [Streptococcus pneumoniae TIGR4]
ATGAAGAAATACCAACAATTATTTAAGCAAATCCAAGAAACCATTCAAAACGAGACTTACGCTGTCGGAGATTTCCTTCC
TAGCGAGCACGACCTTATGGAGCAATATCAAGTGAGTCGTGATACCGTCCGAAAGGCCCTGTCTCTCCTCCAAGAGGAAG
GATTGATCAAAAAGATAAGAGGGCAAGGTTCTCAAGTCGTCAAAGAAGAAACCGTCAATTTCCCTGTATCCAACCTAACC
AGCTACCAAGAACTAGTTAAAGAACTTGGACTGCGCTCTAAAACCAACGTGGTCAGTCTGGACAAGATTATTATTGATAA
AAAATCCTCACTGATAACCGGTTTCCCAGAGTTTCGGATGGTTTGGAAGGTGGTCCGCCAGCGTGTGGTGGATGATCTGG
TATCCGTTCTGGATACGGACTATCTGGATATGGAACTCATCCCAAATCTCACTCGCCAAATTGCTGAGCAGTCTATCTAT
TCTTATATAGAAAATGGCCTCAAACTCCTTATTGATTATGCTCAGAAGGAAATCACCATTGACCACTCAAGCGACCGAGA
CAAGATTCTCATGGACATTGGCAAAGACCCTTATGTCGTTTCGATTAAATCAAAAGTCTATCTCCAAGACGGACGCCAAT
TTCAGTTTACCGAAAGTCGCCATAAGTTAGAGAAATTTAGATTTGTAGATTTTGCAAAACGCAAGAAATAA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, gntR family (GntR)

(3-66)

UTRA domain (UTRA)

(89-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2URH4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

59.322

100

0.593

Multiple sequence alignment