Detailed information    

insolico Bioinformatically predicted

Overview

Name   ymcA   Type   Regulator
Locus tag   LOZ87_RS08720 Genome accession   NZ_CP087391
Coordinates   1714235..1714666 (+) Length   143 a.a.
NCBI ID   WP_003154113.1    Uniprot ID   A7Z4X3
Organism   Bacillus amyloliquefaciens strain ZF57     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 1709235..1719666
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LOZ87_RS08700 (LOZ87_08700) spoVS 1709805..1710065 (+) 261 WP_003154135.1 stage V sporulation protein SpoVS -
  LOZ87_RS08705 (LOZ87_08705) tdh 1710323..1711369 (+) 1047 WP_032866039.1 L-threonine 3-dehydrogenase -
  LOZ87_RS08710 (LOZ87_08710) - 1711382..1712560 (+) 1179 WP_029325912.1 glycine C-acetyltransferase -
  LOZ87_RS08715 (LOZ87_08715) miaB 1712703..1714232 (+) 1530 WP_003154116.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  LOZ87_RS08720 (LOZ87_08720) ymcA 1714235..1714666 (+) 432 WP_003154113.1 RicAFT regulatory complex protein RicA family protein Regulator
  LOZ87_RS08725 (LOZ87_08725) cotE 1714919..1715464 (+) 546 WP_003154111.1 outer spore coat protein CotE -
  LOZ87_RS08730 (LOZ87_08730) hexA 1715583..1718168 (+) 2586 WP_039063192.1 DNA mismatch repair protein MutS Machinery gene

Sequence

Protein


Download         Length: 143 a.a.        Molecular weight: 16082.22 Da        Isoelectric Point: 5.0213

>NTDB_id=545980 LOZ87_RS08720 WP_003154113.1 1714235..1714666(+) (ymcA) [Bacillus amyloliquefaciens strain ZF57]
MTLYSKKDIVQQARNLAKMISETEEVDFFKRAEAQINENEKVSAIINQIKTLQKQAVNLKHYEKLEALKQVESKIDALQE
ELEGIPIIQEFRDSQIEVNDLLQLVAHTISNQVTNEIITSTGGNLLTGETGSKVKHSNNSCSI

Nucleotide


Download         Length: 432 bp        

>NTDB_id=545980 LOZ87_RS08720 WP_003154113.1 1714235..1714666(+) (ymcA) [Bacillus amyloliquefaciens strain ZF57]
ATGACGCTTTACTCAAAGAAAGACATTGTACAGCAGGCTAGGAACCTTGCGAAAATGATTTCTGAAACAGAAGAAGTTGA
TTTTTTCAAACGCGCCGAGGCGCAGATTAACGAAAATGAAAAAGTCTCTGCGATTATTAATCAGATTAAAACCCTGCAAA
AGCAAGCCGTTAACCTGAAGCACTACGAAAAGCTTGAAGCGCTGAAACAAGTGGAAAGTAAAATTGACGCCCTGCAGGAA
GAACTTGAAGGGATTCCGATCATTCAGGAATTCAGAGATTCCCAGATTGAGGTCAATGACCTTCTTCAGCTTGTCGCACA
TACGATCTCAAATCAGGTGACAAACGAAATCATTACATCTACCGGAGGCAACCTGCTGACGGGAGAAACCGGTTCAAAAG
TAAAACATTCGAATAACAGCTGTTCTATTTAA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(9-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A7Z4X3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ymcA Bacillus subtilis subsp. subtilis str. 168

91.608

100

0.916