Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   LOZ87_RS08290 Genome accession   NZ_CP087391
Coordinates   1626705..1627484 (+) Length   259 a.a.
NCBI ID   WP_039063099.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain ZF57     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1621705..1632484
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LOZ87_RS08270 (LOZ87_08270) trmFO 1622392..1623699 (+) 1308 WP_039063098.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  LOZ87_RS08275 (LOZ87_08275) xerC 1623769..1624686 (+) 918 WP_007409774.1 tyrosine recombinase XerC -
  LOZ87_RS08280 (LOZ87_08280) hslV 1624702..1625247 (+) 546 WP_003154267.1 ATP-dependent protease subunit HslV -
  LOZ87_RS08285 (LOZ87_08285) hslU 1625264..1626667 (+) 1404 WP_007409775.1 HslU--HslV peptidase ATPase subunit -
  LOZ87_RS08290 (LOZ87_08290) codY 1626705..1627484 (+) 780 WP_039063099.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  LOZ87_RS08295 (LOZ87_08295) flgB 1627838..1628227 (+) 390 WP_003154260.1 flagellar basal body rod protein FlgB -
  LOZ87_RS08300 (LOZ87_08300) flgC 1628227..1628679 (+) 453 WP_039063101.1 flagellar basal body rod protein FlgC -
  LOZ87_RS08305 (LOZ87_08305) fliE 1628690..1629010 (+) 321 WP_007409777.1 flagellar hook-basal body complex protein FliE -
  LOZ87_RS08310 (LOZ87_08310) fliF 1629053..1630663 (+) 1611 WP_039063103.1 flagellar basal-body MS-ring/collar protein FliF -
  LOZ87_RS08315 (LOZ87_08315) fliG 1630676..1631692 (+) 1017 WP_003154256.1 flagellar motor switch protein FliG -
  LOZ87_RS08320 (LOZ87_08320) fliH 1631685..1632440 (+) 756 WP_032866059.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29070.27 Da        Isoelectric Point: 4.6017

>NTDB_id=545975 LOZ87_RS08290 WP_039063099.1 1626705..1627484(+) (codY) [Bacillus amyloliquefaciens strain ZF57]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPIENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=545975 LOZ87_RS08290 WP_039063099.1 1626705..1627484(+) (codY) [Bacillus amyloliquefaciens strain ZF57]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ATCAGCAGATTGAAAATGACCGCATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCGTTTCCTATAGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTCATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGAGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCGCGAAGCAAAGCTGTTGTTCAAATGGCGATCAGTTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAACGAAGGCTTGCTTGTGGCAAGTAAGATTGCGGACCGTGTCGGCATTACGC
GTTCAGTAATCGTTAACGCGCTGAGAAAGCTGGAAAGCGCAGGCGTCATTGAATCCAGATCACTGGGAATGAAGGGGACG
TACATTAAAGTTCTGAACAACAAATTCCTTATTGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterProScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

98.842

100

0.988
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.843

98.456

0.471