Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimT   Type   Machinery gene
Locus tag   LO000_RS16860 Genome accession   NZ_CP087354
Coordinates   3467911..3468426 (+) Length   171 a.a.
NCBI ID   WP_000477151.1    Uniprot ID   V5VA61
Organism   Acinetobacter baumannii strain DB002     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3462911..3473426
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LO000_RS16840 - 3463242..3464702 (+) 1461 WP_000004974.1 amino acid permease -
  LO000_RS16845 - 3464980..3466185 (+) 1206 WP_000512708.1 RtcB family protein -
  LO000_RS16850 - 3466189..3466347 (+) 159 WP_000692859.1 hypothetical protein -
  LO000_RS16855 omp38 3466470..3467531 (-) 1062 WP_000777885.1 outer membrane protein Omp38 -
  LO000_RS16860 fimT 3467911..3468426 (+) 516 WP_000477151.1 GspH/FimT family pseudopilin Machinery gene
  LO000_RS16865 - 3468535..3469710 (+) 1176 WP_000129968.1 thiolase family protein -
  LO000_RS16870 - 3469837..3470280 (+) 444 WP_001176585.1 VOC family protein -
  LO000_RS16875 - 3470323..3470676 (-) 354 WP_000457783.1 multidrug efflux SMR transporter -
  LO000_RS16880 - 3470759..3471244 (-) 486 WP_000935247.1 DUF934 domain-containing protein -
  LO000_RS16885 - 3471237..3472880 (-) 1644 WP_000281764.1 nitrite/sulfite reductase -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19606.86 Da        Isoelectric Point: 8.8196

>NTDB_id=545805 LO000_RS16860 WP_000477151.1 3467911..3468426(+) (fimT) [Acinetobacter baumannii strain DB002]
MFKSPGFTIVELTITLVILVIMSVIAIPLYHQFMASVELKNTPRILTIHIQKAKYDAIIRHKNVVLCPSSDQLVCNTNWD
NRVISFVDNNRNLQHDLNEELLTSIDLNHHYGSMKLQRFGKKQNSIIFQGSSGLPIESNGSFIYCSYDQLKNFKLILSKM
GHVRLEELKNC

Nucleotide


Download         Length: 516 bp        

>NTDB_id=545805 LO000_RS16860 WP_000477151.1 3467911..3468426(+) (fimT) [Acinetobacter baumannii strain DB002]
ATGTTTAAATCTCCTGGTTTTACTATAGTTGAGCTCACTATAACACTCGTAATTCTTGTGATTATGTCAGTTATAGCCAT
TCCTTTATACCATCAATTTATGGCATCTGTAGAACTAAAAAATACGCCGCGCATACTCACAATTCATATACAAAAAGCCA
AATATGACGCAATTATTAGGCATAAGAATGTTGTTCTTTGTCCAAGTTCTGATCAATTGGTCTGCAATACGAATTGGGAT
AACCGCGTAATCAGCTTTGTAGATAATAACCGTAATCTACAACATGATTTAAATGAAGAATTATTGACCTCTATAGATCT
TAACCATCACTACGGTTCTATGAAATTACAACGTTTTGGAAAAAAACAAAATAGTATTATTTTTCAAGGTAGTTCTGGAT
TACCCATCGAGTCGAATGGCAGTTTTATCTATTGTTCTTATGACCAGCTTAAAAACTTTAAATTAATTCTTAGCAAAATG
GGCCATGTGCGCTTAGAAGAGCTTAAAAATTGTTAG

Domains

Predicted by InterProScan.

Type II transport protein GspH (GspH)

(50-149)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB V5VA61

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimT Acinetobacter baylyi ADP1

43.976

97.076

0.427