Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimT   Type   Machinery gene
Locus tag   LO011_RS15225 Genome accession   NZ_CP087340
Coordinates   3142775..3143290 (+) Length   171 a.a.
NCBI ID   WP_000477151.1    Uniprot ID   V5VA61
Organism   Acinetobacter baumannii strain DB008     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3137775..3148290
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LO011_RS15205 - 3138094..3139554 (+) 1461 WP_000004971.1 amino acid permease -
  LO011_RS15210 - 3139831..3141036 (+) 1206 WP_000512698.1 RtcB family protein -
  LO011_RS15215 - 3141055..3141198 (+) 144 WP_162138624.1 hypothetical protein -
  LO011_RS15220 omp38 3141323..3142393 (-) 1071 WP_000777875.1 outer membrane protein Omp38 -
  LO011_RS15225 fimT 3142775..3143290 (+) 516 WP_000477151.1 GspH/FimT family pseudopilin Machinery gene
  LO011_RS15230 - 3143399..3144574 (+) 1176 WP_000129968.1 thiolase family protein -
  LO011_RS15235 - 3144701..3145144 (+) 444 WP_016653578.1 VOC family protein -
  LO011_RS15240 - 3145187..3145540 (-) 354 WP_000457785.1 multidrug efflux SMR transporter -
  LO011_RS15245 - 3145622..3146107 (-) 486 WP_000935247.1 DUF934 domain-containing protein -
  LO011_RS15250 - 3146100..3147743 (-) 1644 WP_000281766.1 nitrite/sulfite reductase -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19606.86 Da        Isoelectric Point: 8.8196

>NTDB_id=545506 LO011_RS15225 WP_000477151.1 3142775..3143290(+) (fimT) [Acinetobacter baumannii strain DB008]
MFKSPGFTIVELTITLVILVIMSVIAIPLYHQFMASVELKNTPRILTIHIQKAKYDAIIRHKNVVLCPSSDQLVCNTNWD
NRVISFVDNNRNLQHDLNEELLTSIDLNHHYGSMKLQRFGKKQNSIIFQGSSGLPIESNGSFIYCSYDQLKNFKLILSKM
GHVRLEELKNC

Nucleotide


Download         Length: 516 bp        

>NTDB_id=545506 LO011_RS15225 WP_000477151.1 3142775..3143290(+) (fimT) [Acinetobacter baumannii strain DB008]
ATGTTTAAATCTCCTGGTTTTACTATAGTTGAGCTCACTATAACACTCGTAATTCTTGTGATTATGTCAGTTATAGCCAT
TCCTTTATACCATCAATTTATGGCATCTGTAGAACTAAAAAATACGCCGCGTATACTCACAATTCATATACAAAAAGCCA
AATATGACGCAATTATTAGGCATAAGAATGTTGTTCTTTGTCCAAGCTCTGATCAATTGGTCTGCAATACGAATTGGGAT
AACCGCGTAATCAGCTTTGTAGATAATAACCGTAATCTACAGCATGATTTAAATGAAGAATTATTGACCTCTATAGATCT
TAACCATCACTACGGTTCTATGAAATTACAACGTTTTGGAAAAAAACAAAATAGTATTATTTTTCAAGGTAGTTCTGGAC
TACCCATCGAGTCGAATGGCAGTTTTATCTATTGTTCTTATGACCAGCTTAAAAACTTTAAATTAATTCTTAGCAAAATG
GGCCATGTGCGCTTAGAAGAGCTTAAAAATTGTTAG

Domains

Predicted by InterProScan.

Type II transport protein GspH (GspH)

(50-149)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB V5VA61

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimT Acinetobacter baylyi ADP1

43.976

97.076

0.427