Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimT   Type   Machinery gene
Locus tag   LO010_RS03475 Genome accession   NZ_CP087335
Coordinates   701282..701797 (-) Length   171 a.a.
NCBI ID   WP_000477148.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain DB053     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 696282..706797
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LO010_RS03450 - 696829..698472 (+) 1644 WP_000281766.1 nitrite/sulfite reductase -
  LO010_RS03455 - 698465..698950 (+) 486 WP_000935250.1 DUF934 domain-containing protein -
  LO010_RS03460 - 699032..699385 (+) 354 WP_032000954.1 multidrug efflux SMR transporter -
  LO010_RS03465 - 699428..699871 (-) 444 WP_001176580.1 VOC family protein -
  LO010_RS03470 - 699998..701173 (-) 1176 WP_000129968.1 thiolase family protein -
  LO010_RS03475 fimT 701282..701797 (-) 516 WP_000477148.1 GspH/FimT family pseudopilin Machinery gene
  LO010_RS03480 omp38 702179..703249 (+) 1071 WP_000777878.1 outer membrane protein Omp38 -
  LO010_RS03485 - 703374..703517 (-) 144 WP_162138624.1 hypothetical protein -
  LO010_RS03490 - 703536..704741 (-) 1206 WP_000512700.1 RtcB family protein -
  LO010_RS03495 - 705019..706479 (-) 1461 WP_000004975.1 amino acid permease -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19647.95 Da        Isoelectric Point: 9.1429

>NTDB_id=545395 LO010_RS03475 WP_000477148.1 701282..701797(-) (fimT) [Acinetobacter baumannii strain DB053]
MFKSPGFTIVELTITLVILVIMSVIAIPLYHQFMASVELKNTPRILTIHIQKAKYDAIIRHKNVVLCPSSDQLVCNTNWD
NRVISFVDNNRNLQHDLNEELLTSIDLNHHYGSMKLQRFGKKQNSIIFQGNSGLPIESNGSFIYCSYDQLKKFKLILSKM
GHVRLEELKNC

Nucleotide


Download         Length: 516 bp        

>NTDB_id=545395 LO010_RS03475 WP_000477148.1 701282..701797(-) (fimT) [Acinetobacter baumannii strain DB053]
ATGTTTAAATCTCCTGGTTTTACTATAGTTGAGCTCACTATAACACTCGTAATTCTTGTGATTATGTCAGTTATAGCCAT
TCCTTTATACCATCAATTTATGGCATCTGTAGAACTAAAAAATACGCCGCGTATACTCACAATTCATATACAAAAAGCCA
AATATGACGCAATTATTAGGCATAAGAATGTTGTTCTTTGTCCAAGTTCTGATCAATTGGTCTGCAATACGAATTGGGAT
AACCGCGTAATCAGCTTTGTAGATAATAACCGTAATCTACAGCATGATTTAAATGAAGAATTATTGACCTCTATAGATCT
TAACCATCACTACGGTTCTATGAAATTACAACGTTTTGGAAAAAAACAAAATAGTATTATTTTTCAAGGTAATTCTGGAC
TACCCATCGAGTCGAATGGCAGTTTTATCTATTGTTCTTATGACCAGCTTAAAAAGTTTAAATTAATTCTTAGCAAAATG
GGCCATGTGCGCTTAGAAGAACTTAAAAATTGTTAG

Domains

Predicted by InterProScan.

Type II transport protein GspH (GspH)

(50-150)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimT Acinetobacter baylyi ADP1

43.976

97.076

0.427