Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   LO004_RS18595 Genome accession   NZ_CP087331
Coordinates   3890472..3891107 (+) Length   211 a.a.
NCBI ID   WP_000633799.1    Uniprot ID   A0AA36K8B3
Organism   Acinetobacter baumannii strain LMG994     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 3885472..3896107
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LO004_RS18575 - 3885549..3886364 (+) 816 WP_000011164.1 DsbC family protein -
  LO004_RS18580 - 3886609..3887910 (+) 1302 WP_000805826.1 homoserine dehydrogenase -
  LO004_RS18585 thrC 3887966..3889105 (+) 1140 WP_000063593.1 threonine synthase -
  LO004_RS18590 pbpG 3889213..3890259 (-) 1047 WP_001984577.1 D-alanyl-D-alanine endopeptidase PBP7/8 -
  LO004_RS18595 letA 3890472..3891107 (+) 636 WP_000633799.1 response regulator Regulator
  LO004_RS18600 pilS 3891118..3892686 (+) 1569 WP_001160339.1 PAS domain-containing sensor histidine kinase Regulator
  LO004_RS18605 - 3892711..3894132 (+) 1422 WP_000840547.1 sigma-54 dependent transcriptional regulator -
  LO004_RS18610 - 3894136..3895320 (-) 1185 WP_000939105.1 S41 family peptidase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 23147.79 Da        Isoelectric Point: 5.0959

>NTDB_id=545371 LO004_RS18595 WP_000633799.1 3890472..3891107(+) (letA) [Acinetobacter baumannii strain LMG994]
MITVLVVDDHELVRTGICRMLEDHADVEVIGQAESGEEAIAIVRQQHPQVVLLDVNMPGIGGVETTRRLLQTAPETKVIA
VSGLAEEPYPSLLLKAGAKGYITKGAPIAEMVRAINKVMQGGKYFSADIAEQLASSYLSDTQQSPFDSLSEREMQVAMMV
VNCISAQEIADKLFVSVKTVNTYRYRIFEKLGIDSDVKLTHLAIRYGLIKP

Nucleotide


Download         Length: 636 bp        

>NTDB_id=545371 LO004_RS18595 WP_000633799.1 3890472..3891107(+) (letA) [Acinetobacter baumannii strain LMG994]
TTGATTACAGTTTTAGTTGTCGATGACCATGAACTGGTACGTACGGGTATTTGCCGTATGTTAGAAGATCATGCCGATGT
TGAGGTAATTGGACAAGCCGAATCGGGCGAAGAAGCAATTGCTATCGTTCGCCAACAACATCCGCAAGTCGTACTGCTGG
ATGTCAACATGCCGGGCATCGGTGGCGTAGAAACAACCCGTCGTTTATTACAGACGGCTCCAGAGACGAAAGTCATTGCT
GTAAGCGGCCTTGCCGAAGAGCCTTACCCATCTTTATTATTAAAAGCCGGTGCAAAAGGCTATATCACTAAAGGCGCGCC
AATTGCCGAAATGGTTCGTGCAATTAATAAGGTCATGCAAGGCGGTAAATATTTTAGTGCAGATATTGCCGAACAACTCG
CGAGCTCATATTTATCCGACACTCAACAATCCCCTTTTGATTCGTTATCGGAACGGGAAATGCAAGTTGCAATGATGGTC
GTCAACTGTATTAGTGCCCAAGAAATTGCCGATAAACTTTTTGTAAGTGTGAAAACTGTAAATACTTACCGTTATCGTAT
TTTTGAAAAGTTAGGAATTGATAGTGATGTAAAACTAACACATCTTGCGATTCGTTACGGTTTGATCAAGCCATAA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-116)

Bacterial regulatory proteins, luxR family (GerE)

(147-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0AA36K8B3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

55.238

99.526

0.55
  letA Legionella pneumophila strain ERS1305867

55.238

99.526

0.55