Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimT   Type   Machinery gene
Locus tag   LO013_RS03490 Genome accession   NZ_CP087325
Coordinates   713113..713628 (-) Length   171 a.a.
NCBI ID   WP_000477151.1    Uniprot ID   V5VA61
Organism   Acinetobacter baumannii strain OC073     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 708113..718628
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LO013_RS03465 - 708659..710302 (+) 1644 WP_000281767.1 nitrite/sulfite reductase -
  LO013_RS03470 - 710295..710780 (+) 486 WP_000935246.1 DUF934 domain-containing protein -
  LO013_RS03475 - 710863..711216 (+) 354 WP_000457783.1 multidrug efflux SMR transporter -
  LO013_RS03480 - 711259..711702 (-) 444 WP_001176583.1 VOC family protein -
  LO013_RS03485 - 711829..713004 (-) 1176 WP_000129968.1 thiolase family protein -
  LO013_RS03490 fimT 713113..713628 (-) 516 WP_000477151.1 GspH/FimT family pseudopilin Machinery gene
  LO013_RS03495 omp38 714011..715054 (+) 1044 WP_000777884.1 outer membrane protein Omp38 -
  LO013_RS03500 - 715179..715322 (-) 144 WP_162541494.1 hypothetical protein -
  LO013_RS03505 - 715341..716546 (-) 1206 WP_000512701.1 RtcB family protein -
  LO013_RS03510 - 716822..718282 (-) 1461 WP_032059048.1 amino acid permease -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19606.86 Da        Isoelectric Point: 8.8196

>NTDB_id=545165 LO013_RS03490 WP_000477151.1 713113..713628(-) (fimT) [Acinetobacter baumannii strain OC073]
MFKSPGFTIVELTITLVILVIMSVIAIPLYHQFMASVELKNTPRILTIHIQKAKYDAIIRHKNVVLCPSSDQLVCNTNWD
NRVISFVDNNRNLQHDLNEELLTSIDLNHHYGSMKLQRFGKKQNSIIFQGSSGLPIESNGSFIYCSYDQLKNFKLILSKM
GHVRLEELKNC

Nucleotide


Download         Length: 516 bp        

>NTDB_id=545165 LO013_RS03490 WP_000477151.1 713113..713628(-) (fimT) [Acinetobacter baumannii strain OC073]
ATGTTTAAATCTCCTGGTTTTACTATAGTTGAGCTCACTATAACACTCGTAATTCTTGTGATTATGTCAGTTATAGCCAT
TCCTTTATACCATCAATTTATGGCATCTGTAGAACTAAAAAATACGCCGCGTATACTCACAATTCATATACAAAAAGCCA
AATATGACGCAATTATTAGGCATAAGAATGTTGTTCTTTGTCCAAGTTCTGATCAATTGGTCTGCAATACGAATTGGGAT
AACCGCGTAATCAGCTTTGTAGATAATAACCGTAATCTACAGCATGATTTAAATGAAGAATTATTGACCTCTATAGATCT
TAACCATCACTACGGTTCTATGAAATTACAACGTTTTGGAAAAAAACAAAATAGTATTATTTTTCAAGGTAGTTCTGGAC
TACCCATCGAGTCGAATGGCAGTTTTATCTATTGTTCTTATGACCAGCTTAAAAACTTTAAATTAATTCTTAGCAAAATG
GGCCATGTGCGCTTAGAAGAGCTTAAAAATTGTTAG

Domains

Predicted by InterProScan.

Type II transport protein GspH (GspH)

(50-149)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB V5VA61

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimT Acinetobacter baylyi ADP1

43.976

97.076

0.427