Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpV   Type   Machinery gene
Locus tag   JYB86_RS07080 Genome accession   NZ_CP070997
Coordinates   1509761..1510105 (+) Length   114 a.a.
NCBI ID   WP_242898261.1    Uniprot ID   -
Organism   Acinetobacter indicus strain LYS68A     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1504761..1515105
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JYB86_RS07050 (JYB86_07050) kdsB 1505459..1506220 (+) 762 WP_205779727.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  JYB86_RS07055 (JYB86_07055) - 1506232..1507215 (+) 984 WP_205779728.1 DNA polymerase III subunit delta' -
  JYB86_RS07060 (JYB86_07060) - 1507227..1507568 (+) 342 WP_005177501.1 PilZ domain-containing protein -
  JYB86_RS07065 (JYB86_07065) - 1507598..1508371 (+) 774 WP_005177502.1 TatD family hydrolase -
  JYB86_RS07070 (JYB86_07070) - 1508432..1509046 (+) 615 WP_016658223.1 TetR/AcrR family transcriptional regulator -
  JYB86_RS07075 (JYB86_07075) - 1509052..1509624 (+) 573 WP_168407097.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  JYB86_RS07080 (JYB86_07080) xcpV 1509761..1510105 (+) 345 WP_242898261.1 type II secretion system protein Machinery gene
  JYB86_RS07085 (JYB86_07085) xcpW 1510102..1510737 (+) 636 WP_152342358.1 type II secretion system minor pseudopilin GspJ Machinery gene
  JYB86_RS07090 (JYB86_07090) gspK 1510783..1511730 (+) 948 WP_075174516.1 type II secretion system minor pseudopilin GspK -
  JYB86_RS07095 (JYB86_07095) - 1511878..1512474 (+) 597 WP_005177512.1 6-pyruvoyl trahydropterin synthase family protein -
  JYB86_RS07100 (JYB86_07100) ung 1512516..1513229 (+) 714 WP_005177514.1 uracil-DNA glycosylase -
  JYB86_RS07105 (JYB86_07105) - 1513226..1514350 (+) 1125 WP_005177517.1 enoyl-CoA hydratase/isomerase family protein -
  JYB86_RS07110 (JYB86_07110) tadA 1514354..1514875 (+) 522 WP_205779730.1 tRNA adenosine(34) deaminase TadA -

Sequence

Protein


Download         Length: 114 a.a.        Molecular weight: 12600.34 Da        Isoelectric Point: 6.2041

>NTDB_id=542086 JYB86_RS07080 WP_242898261.1 1509761..1510105(+) (xcpV) [Acinetobacter indicus strain LYS68A]
MVALAIFATAAMALTQVAMQYTQSTSHAILRTKAQFVALNEQALMEIQQDWLTGTQSKQVTLQGESWQIDKSAQPTISPN
VQRVEVQVSLFNPDTGQVEAGITHLVFFNHRVAQ

Nucleotide


Download         Length: 345 bp        

>NTDB_id=542086 JYB86_RS07080 WP_242898261.1 1509761..1510105(+) (xcpV) [Acinetobacter indicus strain LYS68A]
ATGGTGGCACTGGCGATTTTCGCTACAGCTGCCATGGCGCTGACTCAAGTGGCCATGCAATATACCCAGTCGACCTCTCA
TGCCATTTTAAGAACCAAAGCACAGTTTGTGGCCTTAAATGAACAGGCTCTAATGGAAATCCAGCAGGACTGGCTCACGG
GTACGCAATCAAAACAGGTCACCCTGCAAGGTGAAAGCTGGCAAATTGATAAAAGCGCACAGCCGACCATTAGCCCGAAT
GTGCAGCGGGTAGAAGTGCAGGTCAGCTTATTTAACCCCGATACCGGTCAGGTTGAAGCCGGCATCACCCATTTGGTGTT
TTTTAATCATCGGGTGGCGCAATGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein I (T2SSI)

(31-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpV Acinetobacter baumannii D1279779

76.786

98.246

0.754