Detailed information    

insolico Bioinformatically predicted

Overview

Name   lytF   Type   Regulator
Locus tag   LLZ83_RS08730 Genome accession   NZ_CP086130
Coordinates   1698102..1698611 (-) Length   169 a.a.
NCBI ID   WP_000392204.1    Uniprot ID   -
Organism   Streptococcus agalactiae strain MIN-180     
Function   cell lysis (predicted from homology)   
Cell lysis

Genomic Context

Location: 1693102..1703611
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LLZ83_RS08705 (LLZ83_08700) tsaD 1693611..1694621 (-) 1011 WP_000655092.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD -
  LLZ83_RS08710 (LLZ83_08705) rimI 1694697..1695104 (-) 408 WP_000445944.1 ribosomal protein S18-alanine N-acetyltransferase -
  LLZ83_RS08715 (LLZ83_08710) tsaB 1695106..1695798 (-) 693 WP_000978603.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB -
  LLZ83_RS08720 (LLZ83_08715) - 1695977..1696207 (+) 231 WP_000639570.1 DNA-dependent RNA polymerase subunit epsilon -
  LLZ83_RS08725 (LLZ83_08720) rnjA 1696261..1697940 (+) 1680 WP_000065495.1 ribonuclease J1 -
  LLZ83_RS08730 (LLZ83_08725) lytF 1698102..1698611 (-) 510 WP_000392204.1 CHAP domain-containing protein Regulator
  LLZ83_RS08735 (LLZ83_08730) glnA 1698759..1700105 (-) 1347 WP_000156223.1 type I glutamate--ammonia ligase -
  LLZ83_RS08740 (LLZ83_08735) - 1700139..1700510 (-) 372 WP_000664341.1 MerR family transcriptional regulator -
  LLZ83_RS08745 (LLZ83_08740) - 1700590..1701129 (-) 540 WP_000854121.1 aromatic acid exporter family protein -
  LLZ83_RS08750 (LLZ83_08745) - 1701392..1702588 (-) 1197 WP_001096752.1 phosphoglycerate kinase -
  LLZ83_RS08755 (LLZ83_08750) - 1702723..1703592 (-) 870 WP_000858923.1 5'-nucleotidase, lipoprotein e(P4) family -

Sequence

Protein


Download         Length: 169 a.a.        Molecular weight: 18334.24 Da        Isoelectric Point: 4.4055

>NTDB_id=540685 LLZ83_RS08730 WP_000392204.1 1698102..1698611(-) (lytF) [Streptococcus agalactiae strain MIN-180]
MEENMNIKQLKSKTMLGTVALVSAFSFASTNADANTYNYAVDVDYLASAEEIAQAHPASNTFPLGQCTWGVKEMATWAGN
WWGNGGDWAASATSAGYTVGTQPRVGSIVCWTDGSYGHVAYVTAVDPVTNKIQVLESNYAGHQWIDNYRGWFDPQNTATP
GVVSYIYPN

Nucleotide


Download         Length: 510 bp        

>NTDB_id=540685 LLZ83_RS08730 WP_000392204.1 1698102..1698611(-) (lytF) [Streptococcus agalactiae strain MIN-180]
ATGGAGGAAAACATGAACATAAAACAATTAAAGTCTAAAACAATGCTTGGAACAGTGGCTTTGGTGTCCGCTTTTTCATT
TGCTTCAACAAATGCAGATGCGAATACATATAACTATGCAGTAGATGTAGACTACCTAGCAAGTGCGGAGGAAATTGCTC
AAGCACATCCAGCTAGTAATACGTTTCCACTAGGTCAATGCACATGGGGTGTAAAGGAGATGGCAACATGGGCAGGTAAC
TGGTGGGGAAACGGTGGTGATTGGGCTGCGAGCGCCACATCAGCTGGTTATACAGTAGGAACACAACCTCGCGTGGGTTC
TATCGTATGTTGGACTGATGGTAGTTATGGACATGTGGCTTATGTTACAGCTGTAGATCCTGTCACTAATAAAATTCAGG
TTTTAGAATCTAATTATGCAGGTCATCAATGGATTGATAATTATCGTGGTTGGTTTGATCCACAAAATACAGCGACACCA
GGGGTAGTTAGCTACATTTATCCGAATTAA

Domains

Predicted by InterProScan.

CHAP domain (CHAP)

(60-138)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lytF Streptococcus gordonii strain NCTC7865

57.576

78.107

0.45
  lytF Streptococcus gordonii str. Challis substr. CH1

57.576

78.107

0.45
  SMU.836 Streptococcus mutans UA159

54.331

75.148

0.408