Detailed information NTG0540306

Bioinformatically predicted

Overview

• Name: recF
• Type: Machinery gene
• Locus tag: LL046_RS10655
• Genome accession: NZ_CP086088
• Coordinates: 2091847..2092923 (+)
• Length: 358 a.a.
• NCBI ID: WP_211752533.1
• Uniprot ID: -
• Organism: Lactococcus lactis subsp. lactis strain EIP13A
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2086847..2097923

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LL046_RS10630 (LL046_10600)	pgsA	2086955..2087527 (-)	573	WP_211752532.1	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	-
LL046_RS10635 (LL046_10605)	-	2087568..2088464 (-)	897	WP_017865077.1	RodZ family helix-turn-helix domain-containing protein	-
LL046_RS10640 (LL046_10610)	yfmH	2088728..2090011 (-)	1284	WP_017865078.1	EF-P 5-aminopentanol modification-associated protein YfmH	-
LL046_RS10645 (LL046_10615)	yfmF	2090001..2091287 (-)	1287	WP_017865079.1	EF-P 5-aminopentanol modification-associated protein YfmF	-
LL046_RS10650 (LL046_10620)	yaaA	2091485..2091847 (+)	363	WP_012898492.1	S4 domain-containing protein YaaA	-
LL046_RS10655 (LL046_10625)	recF	2091847..2092923 (+)	1077	WP_211752533.1	DNA replication/repair protein RecF	Machinery gene
LL046_RS10660 (LL046_10630)	-	2093010..2093378 (-)	369	WP_058211133.1	carboxymuconolactone decarboxylase family protein	-
LL046_RS10665 (LL046_10635)	-	2093456..2093833 (+)	378	WP_017865081.1	MerR family transcriptional regulator	-
LL046_RS10670 (LL046_10640)	-	2093846..2094793 (-)	948	WP_026138958.1	alpha/beta hydrolase	-
LL046_RS10675 (LL046_10645)	galE	2094917..2095897 (-)	981	WP_017865083.1	UDP-glucose 4-epimerase GalE	-

Sequence

Protein

• Length: 358 a.a.
• Molecular weight: 41342.20 Da
• Isoelectric Point: 6.8652

>NTDB_id=540306 LL046_RS10655 WP_211752533.1 2091847..2092923(+) (recF) [Lactococcus lactis subsp. lactis strain EIP13A]
MKLKAIELKNFRNYEELKLDFHPNLNIFLGQNAQGKTNILEAIHFLALTRSHRTSHDKELISWSQQEMKVSGVVEKAHAT
VPLEVQLSPKGRIAKANHLKENRLADYVGQLKILMFAPENLELVKGSPATRRKFMDIELGQIHAVYLYDSMRYNRALKER
NAYLKFDKDKIDKNFLSVLDGQLAEHGNKIMLERQNFIDKLEVHAKKIHEQLTHGKENLKIIYNQNVKTDFSKELLSRQD
HDIFRHQTSVGPHRDDLQFFINEINVADFGSQGQQRTVALSIKLAEIDLIFEETGEYPILLLDDVMSELDNHRQLDLIET
SLGKTQTFITTTTLDHLKNLPENLSIFHVNAGTIEQEQ

Nucleotide

• Length: 1077 bp

>NTDB_id=540306 LL046_RS10655 WP_211752533.1 2091847..2092923(+) (recF) [Lactococcus lactis subsp. lactis strain EIP13A]
ATGAAACTCAAAGCAATTGAACTCAAAAATTTTCGTAATTATGAGGAATTAAAACTTGATTTTCATCCTAATCTCAATAT
TTTTTTAGGACAAAATGCTCAAGGGAAAACAAATATTCTTGAAGCGATTCATTTTTTAGCACTCACTCGTAGTCACAGAA
CAAGTCACGACAAAGAGCTCATTTCTTGGTCGCAACAAGAAATGAAGGTCTCAGGAGTCGTTGAAAAAGCTCATGCAACT
GTTCCACTTGAAGTTCAATTAAGTCCCAAAGGGAGAATTGCTAAAGCCAATCATCTCAAAGAAAATCGCTTAGCCGACTA
CGTTGGTCAACTAAAAATCTTGATGTTTGCACCTGAAAATTTGGAATTGGTCAAAGGTTCTCCTGCTACCCGCAGAAAAT
TTATGGATATTGAACTGGGACAAATCCATGCGGTTTACCTTTATGATTCCATGCGATATAATCGTGCATTAAAAGAACGG
AATGCTTACTTAAAATTTGATAAAGACAAAATTGATAAAAATTTTTTAAGTGTTCTTGACGGACAATTAGCTGAACATGG
TAATAAAATCATGCTTGAGCGGCAAAATTTTATTGATAAACTTGAAGTTCATGCAAAAAAAATCCATGAGCAACTTACTC
ATGGTAAAGAAAATTTAAAAATCATTTATAATCAAAATGTGAAAACTGACTTTTCAAAAGAATTATTGAGCAGACAAGAC
CATGATATTTTTAGGCATCAAACATCGGTTGGCCCTCATCGTGACGATTTACAATTTTTTATCAATGAGATTAATGTTGC
TGATTTTGGTAGTCAAGGACAACAACGAACCGTTGCTCTCTCAATTAAATTAGCAGAAATTGATTTAATTTTTGAAGAGA
CTGGAGAGTATCCGATTTTACTTTTAGATGATGTCATGAGTGAATTAGACAATCATCGTCAACTTGATTTGATTGAAACA
AGTTTGGGTAAAACACAAACTTTTATAACTACAACTACTCTTGATCATCTTAAAAATTTACCTGAAAATCTGAGTATTTT
CCATGTTAATGCTGGAACCATTGAACAAGAGCAATAA

Domains

Predicted by InterProScan.

• RecF/RecN/SMC N terminal domain (SMC_N) (3-353)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recF	Streptococcus pneumoniae R6	55.278	100	0.556
recF	Bacillus subtilis subsp. subtilis str. 168	46.264	97.207	0.45