Detailed information    

insolico Bioinformatically predicted

Overview

Name   ciaH   Type   Regulator
Locus tag   LL045_RS08600 Genome accession   NZ_CP086083
Coordinates   1781810..1783180 (-) Length   456 a.a.
NCBI ID   WP_098393333.1    Uniprot ID   -
Organism   Lactococcus lactis subsp. lactis strain EIP20A     
Function   Required for optimal comC expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1776810..1788180
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LL045_RS08585 (LL045_08570) - 1777984..1779417 (-) 1434 WP_010906086.1 6-phospho-beta-glucosidase -
  LL045_RS08590 (LL045_08575) yidD 1779538..1779804 (-) 267 WP_038601637.1 membrane protein insertion efficiency factor YidD -
  LL045_RS08595 (LL045_08580) - 1779921..1781663 (-) 1743 WP_038601639.1 1-deoxy-D-xylulose-5-phosphate synthase -
  LL045_RS08600 (LL045_08585) ciaH 1781810..1783180 (-) 1371 WP_098393333.1 cell wall metabolism sensor histidine kinase WalK Regulator
  LL045_RS08605 (LL045_08590) ciaR 1783274..1783942 (-) 669 WP_021722129.1 response regulator transcription factor Regulator
  LL045_RS08610 (LL045_08595) - 1784120..1785094 (-) 975 WP_058205412.1 LacI family DNA-binding transcriptional regulator -
  LL045_RS08615 (LL045_08600) - 1785247..1787502 (-) 2256 WP_146978187.1 glycoside hydrolase family 65 protein -

Sequence

Protein


Download         Length: 456 a.a.        Molecular weight: 51358.89 Da        Isoelectric Point: 9.4589

>NTDB_id=540199 LL045_RS08600 WP_098393333.1 1781810..1783180(-) (ciaH) [Lactococcus lactis subsp. lactis strain EIP20A]
MKKIIKKVKSSAIVKNDGKNFLHFFLAFTVIFVALAVIIIQVMQLGMYRATDQNLHNLAQNRVFLIEAANNQLGMNNSQD
SGYYGPNNSVIFYDSEGKSFIPSAGSNANISTNFGMSLLQKTMKFNENQINTIQTVSVKNPYGDNWHYRYLTTSQFIITN
TDGTVTPVYAQIFSNVDQIQDAMSRAMWVIVTTMITFWLLSVIISLYLANWTLRPILAAYEKQKEFVENASHELRTPLAI
LQNRLELLFQKPTATIIDESENISESLSEVRNMRLLTSNLLNLARRDSGIRIEPEATTTTYFENIFNSYEMLAENAGKKF
SGHLKLDGTVNLDQALIKQLLTILFDNALKYTGDEGEISVDVQKNGGFLVFAVADNGEGISDEDKKKIFDRFFRVDKART
RQKGGLGLGLSLAKQIVEAYNGKITVEDNKPKGTKFIIRIRVDSTISNPAKIFQKL

Nucleotide


Download         Length: 1371 bp        

>NTDB_id=540199 LL045_RS08600 WP_098393333.1 1781810..1783180(-) (ciaH) [Lactococcus lactis subsp. lactis strain EIP20A]
TTGAAGAAAATAATTAAAAAAGTTAAATCTTCAGCTATTGTAAAAAATGATGGGAAAAATTTCCTTCATTTTTTTCTAGC
TTTTACAGTCATTTTTGTTGCTTTAGCCGTGATTATTATTCAAGTCATGCAATTAGGAATGTATCGAGCGACTGACCAAA
ATTTACACAATTTGGCTCAAAACCGAGTCTTTTTGATAGAAGCGGCGAATAATCAATTAGGAATGAATAATTCGCAAGAT
AGTGGCTATTACGGCCCCAATAATAGTGTAATTTTTTATGATTCAGAGGGTAAAAGTTTCATACCTTCAGCAGGCTCAAA
TGCAAATATAAGTACAAACTTTGGCATGAGCCTTCTGCAAAAAACAATGAAATTTAACGAAAATCAAATTAACACTATTC
AAACTGTTTCTGTAAAAAATCCTTATGGAGATAATTGGCACTATCGTTATCTGACAACATCACAATTTATTATTACAAAT
ACTGATGGAACAGTAACACCGGTTTATGCACAAATTTTTTCAAACGTTGACCAAATTCAAGATGCCATGAGCCGTGCCAT
GTGGGTCATTGTGACAACAATGATTACTTTCTGGCTTCTGTCAGTAATTATTAGTTTGTATCTTGCAAATTGGACATTGA
GACCTATCCTGGCTGCTTATGAAAAGCAAAAAGAATTTGTTGAAAATGCTTCACATGAATTGAGAACACCTCTGGCAATT
TTGCAAAATCGTCTAGAATTACTTTTCCAAAAGCCAACAGCAACAATTATTGATGAATCAGAAAATATTTCTGAAAGTTT
ATCAGAAGTTCGTAATATGCGTTTATTAACAAGTAACTTACTGAACTTAGCTCGTCGAGATTCTGGAATCAGAATTGAAC
CAGAGGCGACTACGACAACTTATTTTGAGAATATTTTTAATAGCTATGAAATGCTTGCTGAAAACGCAGGTAAAAAGTTT
TCAGGCCATTTGAAATTAGATGGAACGGTTAATTTGGACCAAGCCCTGATTAAACAATTGCTAACCATCTTATTTGATAA
TGCCCTTAAATACACGGGTGATGAGGGTGAAATCTCTGTAGATGTTCAAAAAAATGGGGGATTTTTAGTTTTTGCTGTCG
CCGATAATGGTGAAGGAATTTCTGATGAAGATAAGAAAAAAATCTTTGACCGCTTTTTCCGAGTAGATAAAGCAAGAACG
CGTCAAAAAGGTGGCTTAGGTTTGGGTCTTTCTCTGGCCAAACAAATTGTTGAAGCTTATAATGGGAAGATTACAGTTGA
AGATAATAAACCTAAAGGTACAAAATTCATTATTAGAATTCGTGTGGATAGCACAATTTCAAATCCTGCAAAAATTTTCC
AAAAGTTGTAA

Domains

Predicted by InterProScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(223-289)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(333-442)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ciaH Streptococcus mutans UA159

48.372

94.298

0.456
  ciaH Streptococcus pneumoniae Rx1

44.321

98.465

0.436
  ciaH Streptococcus pneumoniae D39

44.321

98.465

0.436
  ciaH Streptococcus pneumoniae R6

44.321

98.465

0.436
  ciaH Streptococcus pneumoniae TIGR4

44.321

98.465

0.436