Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   LJC78_RS19655 Genome accession   NZ_CP086007
Coordinates   3662306..3663439 (-) Length   377 a.a.
NCBI ID   WP_014481175.1    Uniprot ID   -
Organism   Bacillus subtilis subsp. natto strain SCP010-1     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 3657306..3668439
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LJC78_RS19615 (LJC78_19615) ywnA 3657436..3657837 (-) 402 WP_003227734.1 Rrf2 family transcriptional regulator -
  LJC78_RS19620 (LJC78_19620) ureC 3657972..3659681 (-) 1710 WP_014481168.1 urease subunit alpha -
  LJC78_RS19625 (LJC78_19625) ureB 3659678..3660052 (-) 375 WP_014481169.1 urease subunit beta -
  LJC78_RS19630 (LJC78_19630) ureA 3660049..3660366 (-) 318 WP_014478236.1 urease subunit gamma -
  LJC78_RS19635 (LJC78_19635) - 3660560..3660718 (-) 159 WP_158332665.1 hypothetical protein -
  LJC78_RS22155 - 3660985..3661197 (-) 213 Protein_3813 urea ABC transporter substrate-binding protein -
  LJC78_RS19645 (LJC78_19645) csbD 3661410..3661598 (-) 189 WP_014481173.1 stress response protein CsbD -
  LJC78_RS19650 (LJC78_19650) - 3661671..3662150 (-) 480 WP_026113664.1 hypothetical protein -
  LJC78_RS19655 (LJC78_19655) rapC 3662306..3663439 (-) 1134 WP_014481175.1 response regulator aspartate phosphatase RapB Regulator
  LJC78_RS19660 (LJC78_19660) moaA 3663631..3664656 (-) 1026 WP_014481177.1 GTP 3',8-cyclase MoaA -
  LJC78_RS19665 (LJC78_19665) fdhD 3664672..3665460 (-) 789 WP_014481178.1 formate dehydrogenase accessory sulfurtransferase FdhD -
  LJC78_RS19670 (LJC78_19670) - 3665693..3665854 (-) 162 WP_003227706.1 hypothetical protein -
  LJC78_RS19675 (LJC78_19675) ywmD 3665949..3666623 (-) 675 WP_014481179.1 vWA domain-containing protein -
  LJC78_RS19680 (LJC78_19680) - 3666676..3666816 (-) 141 WP_014481180.1 hypothetical protein -
  LJC78_RS19685 (LJC78_19685) ywmC 3666947..3667630 (-) 684 WP_014481181.1 vWA domain-containing protein -

Sequence

Protein


Download         Length: 377 a.a.        Molecular weight: 45041.13 Da        Isoelectric Point: 4.7537

>NTDB_id=539680 LJC78_RS19655 WP_014481175.1 3662306..3663439(-) (rapC) [Bacillus subtilis subsp. natto strain SCP010-1]
MAAYEIPSSQVGVKINKWYKHILAFQVADAVKLKEEIDLDIEQMEEDQLLLLYYQLISYRHQIMLDYVKPDLHEESQLQY
RELIKTLESNQDSISGLSEYYFHLFRGMYEFEQNNYISAISFYRKAEKMLAFVEDEIERAEFHFKVAEVFYIMKQTHFSM
NHAVQALETYKAHDFYRVRRIQCHFVISGNYIDYRNYEKALEHLDDAYRLALLEGQPRLIGSALYNIGNCYDDKGELDQA
AEYFEKALTVFEDYQLEQLPKALFSLTRVLFKKQDSEAAMRYYEKGIAIAQKRNDFFSLAKYKFLQALYVESVNLDMIQE
VFDYMEEKGLYVYIEEFALDAASYFSHHEQYKEAVYFYEKAVSMREMIQRNDCLYEV

Nucleotide


Download         Length: 1134 bp        

>NTDB_id=539680 LJC78_RS19655 WP_014481175.1 3662306..3663439(-) (rapC) [Bacillus subtilis subsp. natto strain SCP010-1]
ATGGCCGCGTACGAGATCCCGTCATCTCAAGTAGGAGTGAAAATCAATAAGTGGTATAAGCACATTTTAGCATTTCAAGT
GGCTGATGCCGTAAAGCTGAAGGAAGAAATTGATCTAGATATCGAACAGATGGAAGAGGATCAGCTGCTTCTCCTGTATT
ATCAGCTGATCAGCTACCGGCACCAAATTATGCTGGATTATGTAAAGCCTGACCTGCACGAGGAATCTCAGCTTCAATAT
CGTGAATTGATCAAAACGCTGGAAAGCAATCAGGACAGCATCTCCGGATTATCTGAGTATTATTTTCACTTGTTTAGAGG
AATGTACGAATTTGAACAGAACAATTACATCTCGGCTATATCCTTTTATCGGAAAGCTGAGAAGATGCTTGCGTTTGTAG
AAGATGAAATTGAAAGAGCGGAATTTCATTTTAAAGTGGCGGAAGTCTTTTATATTATGAAGCAGACGCACTTTTCCATG
AACCACGCTGTACAGGCGCTGGAGACGTATAAGGCTCACGATTTTTATAGAGTCAGAAGAATTCAATGCCATTTCGTCAT
ATCAGGAAACTACATAGACTACAGAAATTATGAAAAAGCGCTTGAACATTTAGATGACGCGTATCGCCTTGCTTTATTGG
AAGGACAGCCCCGTTTGATCGGATCAGCCCTTTATAATATCGGGAATTGCTATGATGACAAGGGGGAGCTGGATCAGGCC
GCCGAATACTTTGAAAAAGCGCTTACTGTCTTCGAGGATTATCAGCTGGAACAGCTTCCAAAAGCGCTCTTCAGCCTGAC
TCGCGTTCTTTTCAAAAAACAAGATAGCGAAGCCGCGATGCGGTACTATGAAAAAGGGATTGCCATTGCCCAAAAACGAA
ACGACTTCTTCAGTCTGGCAAAATATAAATTTCTGCAGGCATTATATGTGGAATCTGTCAATTTGGATATGATTCAAGAA
GTATTTGATTATATGGAAGAAAAGGGCCTGTATGTATATATTGAAGAATTTGCTTTAGATGCTGCCTCTTATTTCAGTCA
TCACGAACAATATAAAGAAGCGGTGTATTTTTATGAAAAAGCGGTCAGCATGAGAGAGATGATTCAAAGGAACGATTGTT
TATATGAAGTATGA

Domains

Predicted by InterProScan.

MalT-like TPR region (TPR_MalT)

(154-305)

response regulator aspartate phosphatase H, N terminal (RapH_N)

(6-66)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

42.632

100

0.43
  rapF Bacillus subtilis subsp. subtilis str. 168

42.4

99.469

0.422