Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   LK402_RS00600 Genome accession   NZ_CP085965
Coordinates   117336..118286 (+) Length   316 a.a.
NCBI ID   WP_002866164.1    Uniprot ID   Q9ALT6
Organism   Campylobacter jejuni strain FDAARGOS_1546     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 112336..123286
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LK402_RS00575 (LK402_00575) - 112693..113595 (-) 903 WP_002866159.1 hypothetical protein -
  LK402_RS00580 (LK402_00580) - 113778..114551 (+) 774 WP_002866160.1 glycosyltransferase family 25 protein -
  LK402_RS00585 (LK402_00585) wlaTB 114544..115500 (+) 957 WP_002869613.1 class E lipooligosaccharide biosynthesis protein WlaTB -
  LK402_RS00590 (LK402_00590) wlaTC 115497..116456 (+) 960 WP_012006735.1 class E lipooligosaccharide biosynthesis protein WlaTC -
  LK402_RS00595 (LK402_00595) - 116459..117277 (-) 819 WP_002866163.1 glycosyltransferase family 2 protein -
  LK402_RS00600 (LK402_00600) waaF 117336..118286 (+) 951 WP_002866164.1 lipopolysaccharide heptosyltransferase II Regulator
  LK402_RS00605 (LK402_00605) - 118338..119837 (+) 1500 WP_002877116.1 MBOAT family O-acyltransferase -
  LK402_RS00610 (LK402_00610) - 119985..120962 (+) 978 WP_002866168.1 hypothetical protein -
  LK402_RS00615 (LK402_00615) gmhA 120966..121526 (-) 561 WP_002877119.1 D-sedoheptulose 7-phosphate isomerase -
  LK402_RS00620 (LK402_00620) rfaE1 121523..122908 (-) 1386 WP_002877121.1 D-glycero-beta-D-manno-heptose-7-phosphate kinase -

Sequence

Protein


Download         Length: 316 a.a.        Molecular weight: 36378.95 Da        Isoelectric Point: 10.3102

>NTDB_id=539504 LK402_RS00600 WP_002866164.1 117336..118286(+) (waaF) [Campylobacter jejuni strain FDAARGOS_1546]
MKIFIHLPTWLGDAVMASPALYAIKEHFKNTQFILYGSLVSTALFREFPNSKIIIENKQTRYKQALSLRKELGKIDLSFA
FRSAFSSKIILHILKTKQRYFFDKNKHKEEHQVLKYLYFIENSLSIKAHFKDLKLPFKLKFQNPLILKNGKKILGLNPGA
SFGSAKRWDASYFAKVALNFSQSHEILIFGAGKAEQELCNEIYQILKEQNIKVKNLCNKTTIKTLCQNIAFCDLFITNDS
GPMHISTVYKIKTVAIFGPTKFTQTSPWQNQNAKLVHLDLACMPCMQKTCPLKHHKCMKDLKPEKVIEEIKKLSTP

Nucleotide


Download         Length: 951 bp        

>NTDB_id=539504 LK402_RS00600 WP_002866164.1 117336..118286(+) (waaF) [Campylobacter jejuni strain FDAARGOS_1546]
ATGAAAATTTTTATACACCTTCCCACTTGGCTAGGCGATGCAGTGATGGCTTCACCTGCTTTATACGCTATAAAAGAACA
TTTTAAAAATACCCAATTTATCCTTTATGGCTCTTTGGTTTCCACAGCACTTTTTAGGGAATTTCCTAATTCTAAAATCA
TCATAGAAAATAAACAAACCCGCTACAAACAAGCCCTATCTTTACGCAAAGAACTTGGTAAAATCGATCTTAGCTTTGCT
TTTAGATCTGCGTTTTCTTCTAAGATTATCTTGCATATTCTCAAAACAAAACAAAGATATTTTTTTGACAAAAACAAGCA
CAAAGAAGAACATCAAGTTTTAAAATACCTTTATTTTATAGAAAACTCACTTAGTATAAAAGCTCATTTTAAAGACTTAA
AGCTTCCCTTTAAGCTAAAATTTCAAAACCCTCTTATCTTAAAAAATGGTAAAAAAATTCTAGGACTCAACCCTGGCGCA
AGCTTTGGAAGTGCAAAAAGATGGGATGCGAGTTATTTTGCTAAAGTGGCTTTAAATTTCAGCCAAAGTCATGAAATTTT
AATCTTTGGCGCAGGAAAAGCCGAACAAGAACTTTGTAATGAAATTTATCAAATTTTAAAAGAACAAAACATAAAAGTAA
AAAATCTTTGCAATAAAACCACCATCAAAACCCTTTGTCAAAATATCGCTTTTTGCGATCTTTTCATCACAAATGACAGT
GGTCCTATGCACATAAGTACGGTTTATAAGATAAAAACCGTGGCTATTTTTGGCCCTACGAAATTTACTCAAACTTCACC
TTGGCAAAATCAAAACGCAAAATTAGTGCATTTAGATCTAGCTTGTATGCCTTGTATGCAAAAAACCTGTCCTTTAAAGC
ACCATAAATGCATGAAAGATCTAAAGCCTGAAAAGGTGATAGAAGAAATTAAAAAATTAAGCACTCCATAA

Domains

Predicted by InterProScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(94-294)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9ALT6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

94.249

99.051

0.934