Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   LJA36_RS02390 Genome accession   NZ_CP085282
Coordinates   636602..637066 (+) Length   154 a.a.
NCBI ID   WP_003154622.1    Uniprot ID   A7Z418
Organism   Bacillus amyloliquefaciens strain TPS17     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 631602..642066
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LJA36_RS02365 - 632108..632656 (-) 549 WP_040238195.1 hypothetical protein -
  LJA36_RS02370 fadH 632770..633534 (-) 765 WP_003154618.1 2,4-dienoyl-CoA reductase -
  LJA36_RS02375 - 633679..634542 (+) 864 WP_039251611.1 metallophosphoesterase -
  LJA36_RS02380 - 634617..635111 (+) 495 WP_095284082.1 L,D-transpeptidase family protein -
  LJA36_RS02385 - 635187..636479 (+) 1293 WP_015239757.1 MFS transporter -
  LJA36_RS02390 kre 636602..637066 (+) 465 WP_003154622.1 YkyB family protein Regulator
  LJA36_RS02395 - 637136..638286 (-) 1151 Protein_481 IS3 family transposase -
  LJA36_RS02400 cheV 638399..639310 (-) 912 WP_039251615.1 chemotaxis protein CheV -
  LJA36_RS02405 - 639499..639660 (+) 162 WP_007409608.1 hypothetical protein -
  LJA36_RS02410 - 639861..641030 (+) 1170 WP_007611083.1 aminotransferase A -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 17784.55 Da        Isoelectric Point: 10.4864

>NTDB_id=538038 LJA36_RS02390 WP_003154622.1 636602..637066(+) (kre) [Bacillus amyloliquefaciens strain TPS17]
MDDHAYSKELQPTIENLSKAVYTVNRHAKTAPNPKYLYLLKKRALQKLVKEGKGKKIGLHFSNNPRFSQQQSDVLISIGD
YYFHMPPTKEDFQHLPHLGTLNQSYRNPKAQMSLTKAKNVLQKYVGLKEKPLAANRQQPAYHKPVFKKLGESYF

Nucleotide


Download         Length: 465 bp        

>NTDB_id=538038 LJA36_RS02390 WP_003154622.1 636602..637066(+) (kre) [Bacillus amyloliquefaciens strain TPS17]
ATGGACGACCACGCTTATTCGAAAGAGCTGCAGCCAACCATCGAGAATCTTTCAAAAGCTGTTTATACTGTGAACCGCCA
TGCAAAAACCGCCCCCAACCCTAAATACCTTTATCTGCTGAAAAAACGGGCATTACAAAAGCTTGTGAAAGAAGGCAAAG
GGAAAAAAATAGGGCTTCACTTTTCAAATAATCCCAGGTTTAGCCAACAGCAGTCAGACGTACTTATCTCTATCGGAGAC
TACTATTTTCACATGCCTCCAACAAAAGAAGACTTCCAGCATCTTCCGCATTTAGGTACGTTAAATCAATCGTACCGCAA
TCCTAAAGCACAAATGTCTTTGACAAAAGCGAAAAACGTATTGCAAAAATATGTGGGCTTAAAGGAAAAACCGCTTGCCG
CCAACAGGCAGCAGCCCGCTTATCATAAACCCGTATTTAAAAAACTTGGTGAGAGTTATTTTTAA

Domains

Predicted by InterProScan.

YkyB-like protein (YkyB)

(13-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A7Z418

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

92.857

100

0.929