Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   LIN99_RS01895 Genome accession   NZ_CP085093
Coordinates   372153..372788 (-) Length   211 a.a.
NCBI ID   WP_005548057.1    Uniprot ID   -
Organism   Aggregatibacter actinomycetemcomitans strain 23S     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 367153..377788
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIN99_RS01870 - 367420..367704 (-) 285 WP_005548070.1 chaperone NapD -
  LIN99_RS01875 narQ 367980..369683 (+) 1704 WP_249850185.1 nitrate/nitrite two-component system sensor histidine kinase NarQ -
  LIN99_RS01880 murB 369698..370723 (+) 1026 WP_005566996.1 UDP-N-acetylmuramate dehydrogenase -
  LIN99_RS01885 - 370739..371053 (+) 315 WP_005548062.1 DUF2322 family protein -
  LIN99_RS01890 rpoH 371238..372086 (+) 849 WP_005548059.1 RNA polymerase sigma factor RpoH -
  LIN99_RS01895 sxy/tfoX 372153..372788 (-) 636 WP_005548057.1 TfoX/Sxy family DNA transformation protein Regulator
  LIN99_RS01900 tuf 374076..375260 (-) 1185 WP_014167500.1 elongation factor Tu -
  LIN99_RS01905 fusA 375324..377426 (-) 2103 WP_005566415.1 elongation factor G -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 23952.09 Da        Isoelectric Point: 10.4976

>NTDB_id=537663 LIN99_RS01895 WP_005548057.1 372153..372788(-) (sxy/tfoX) [Aggregatibacter actinomycetemcomitans strain 23S]
MTTVSQRLKNEFKQLVDGEISIKNLFTGHGIFHSGIMFALHQNDSIFLRAEDELVPYLESLGAVAYSIDPNNTNKLALHR
YYQLPHSIRKNKPLFEKTVKLSIQQAKFKKVAEDLTKKERIKELANFSIKHERLLAKINIYTVSEFQKIGAIHSYVRLKK
LGVSANVELLWTLCAALKNKHASLLTEKEKSAILTKLNVLLAANGLRKVKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=537663 LIN99_RS01895 WP_005548057.1 372153..372788(-) (sxy/tfoX) [Aggregatibacter actinomycetemcomitans strain 23S]
ATGACAACGGTATCTCAAAGACTCAAGAACGAATTCAAACAACTAGTAGATGGTGAAATCAGTATTAAAAATTTATTCAC
CGGACATGGTATATTTCATTCAGGAATAATGTTTGCACTTCATCAAAACGATAGCATTTTCTTGCGGGCTGAAGATGAGT
TAGTCCCTTACTTAGAAAGTTTAGGTGCTGTAGCTTATTCAATTGATCCCAATAATACGAATAAACTGGCACTCCACCGT
TACTATCAACTTCCTCATTCTATTCGTAAAAATAAGCCGTTATTTGAAAAAACCGTTAAATTGTCTATTCAACAGGCAAA
ATTTAAGAAAGTCGCTGAAGATTTGACAAAAAAAGAGCGAATTAAAGAATTGGCTAATTTTTCCATTAAGCATGAAAGAT
TGCTGGCTAAAATTAATATTTATACGGTAAGTGAATTTCAGAAGATCGGCGCAATTCACAGCTATGTTAGGTTAAAGAAA
CTGGGTGTTTCTGCCAACGTAGAATTGTTATGGACTTTATGCGCCGCATTAAAAAATAAGCATGCTTCGTTGCTTACGGA
AAAGGAAAAATCGGCAATTTTGACTAAATTAAATGTTTTACTTGCAGCAAATGGTTTGCGGAAAGTAAAGGCCTAA

Domains

Predicted by InterProScan.

TfoX N-terminal domain (TfoX_N)

(15-106)

TfoX C-terminal domain (TfoX_C)

(118-196)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Haemophilus influenzae Rd KW20

40.513

92.417

0.374