Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   LIN96_RS01950 Genome accession   NZ_CP085090
Coordinates   388949..389584 (-) Length   211 a.a.
NCBI ID   WP_005548057.1    Uniprot ID   -
Organism   Aggregatibacter actinomycetemcomitans strain 31R     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 383949..394584
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIN96_RS01925 - 384216..384500 (-) 285 WP_005548070.1 chaperone NapD -
  LIN96_RS01930 narQ 384776..386479 (+) 1704 WP_005548066.1 nitrate/nitrite two-component system sensor histidine kinase NarQ -
  LIN96_RS01935 murB 386494..387519 (+) 1026 WP_005566996.1 UDP-N-acetylmuramate dehydrogenase -
  LIN96_RS01940 - 387535..387849 (+) 315 WP_005548062.1 DUF2322 family protein -
  LIN96_RS01945 rpoH 388034..388882 (+) 849 WP_249847564.1 RNA polymerase sigma factor RpoH -
  LIN96_RS01950 sxy/tfoX 388949..389584 (-) 636 WP_005548057.1 TfoX/Sxy family DNA transformation protein Regulator
  LIN96_RS01955 tuf 390872..392056 (-) 1185 WP_014167500.1 elongation factor Tu -
  LIN96_RS01960 fusA 392120..394222 (-) 2103 WP_005566415.1 elongation factor G -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 23952.09 Da        Isoelectric Point: 10.4976

>NTDB_id=537512 LIN96_RS01950 WP_005548057.1 388949..389584(-) (sxy/tfoX) [Aggregatibacter actinomycetemcomitans strain 31R]
MTTVSQRLKNEFKQLVDGEISIKNLFTGHGIFHSGIMFALHQNDSIFLRAEDELVPYLESLGAVAYSIDPNNTNKLALHR
YYQLPHSIRKNKPLFEKTVKLSIQQAKFKKVAEDLTKKERIKELANFSIKHERLLAKINIYTVSEFQKIGAIHSYVRLKK
LGVSANVELLWTLCAALKNKHASLLTEKEKSAILTKLNVLLAANGLRKVKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=537512 LIN96_RS01950 WP_005548057.1 388949..389584(-) (sxy/tfoX) [Aggregatibacter actinomycetemcomitans strain 31R]
ATGACAACGGTATCTCAAAGACTCAAGAACGAATTCAAACAACTAGTAGATGGTGAAATCAGTATTAAAAATTTATTCAC
CGGACATGGTATATTTCATTCAGGAATAATGTTTGCACTTCATCAAAACGATAGCATTTTCTTGCGGGCTGAAGATGAGT
TAGTCCCTTACTTAGAAAGTTTAGGTGCTGTAGCTTATTCAATTGATCCCAATAATACGAATAAACTGGCACTCCACCGT
TACTATCAACTTCCTCATTCTATTCGTAAAAATAAGCCGTTATTTGAAAAAACCGTTAAATTGTCTATTCAACAGGCAAA
ATTTAAGAAAGTCGCTGAAGATTTGACAAAAAAAGAGCGAATTAAAGAATTGGCTAATTTTTCCATTAAGCATGAAAGAT
TGCTGGCTAAAATTAATATTTATACGGTAAGTGAATTTCAGAAGATCGGCGCAATTCACAGCTATGTTAGGTTAAAGAAA
CTGGGTGTTTCTGCCAACGTAGAATTGTTATGGACTTTATGCGCCGCATTAAAAAATAAGCATGCTTCGTTGCTTACGGA
AAAGGAAAAATCGGCAATTTTGACTAAATTAAATGTTTTACTTGCAGCAAATGGTTTGCGGAAAGTAAAGGCCTAA

Domains

Predicted by InterProScan.

TfoX N-terminal domain (TfoX_N)

(15-106)

TfoX C-terminal domain (TfoX_C)

(118-196)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Haemophilus influenzae Rd KW20

40.513

92.417

0.374