Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   LIN92_RS01195 Genome accession   NZ_CP085089
Coordinates   239228..239863 (-) Length   211 a.a.
NCBI ID   WP_005548057.1    Uniprot ID   -
Organism   Aggregatibacter actinomycetemcomitans strain 31S     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 234228..244863
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIN92_RS01170 - 234495..234779 (-) 285 WP_005548070.1 chaperone NapD -
  LIN92_RS01175 narQ 235055..236758 (+) 1704 WP_005548066.1 nitrate/nitrite two-component system sensor histidine kinase NarQ -
  LIN92_RS01180 murB 236773..237798 (+) 1026 WP_005566996.1 UDP-N-acetylmuramate dehydrogenase -
  LIN92_RS01185 - 237814..238128 (+) 315 WP_005548062.1 DUF2322 family protein -
  LIN92_RS01190 rpoH 238313..239161 (+) 849 WP_249847564.1 RNA polymerase sigma factor RpoH -
  LIN92_RS01195 sxy/tfoX 239228..239863 (-) 636 WP_005548057.1 TfoX/Sxy family DNA transformation protein Regulator
  LIN92_RS01200 tuf 241151..242335 (-) 1185 WP_014167500.1 elongation factor Tu -
  LIN92_RS01205 fusA 242399..244501 (-) 2103 WP_005566415.1 elongation factor G -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 23952.09 Da        Isoelectric Point: 10.4976

>NTDB_id=537455 LIN92_RS01195 WP_005548057.1 239228..239863(-) (sxy/tfoX) [Aggregatibacter actinomycetemcomitans strain 31S]
MTTVSQRLKNEFKQLVDGEISIKNLFTGHGIFHSGIMFALHQNDSIFLRAEDELVPYLESLGAVAYSIDPNNTNKLALHR
YYQLPHSIRKNKPLFEKTVKLSIQQAKFKKVAEDLTKKERIKELANFSIKHERLLAKINIYTVSEFQKIGAIHSYVRLKK
LGVSANVELLWTLCAALKNKHASLLTEKEKSAILTKLNVLLAANGLRKVKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=537455 LIN92_RS01195 WP_005548057.1 239228..239863(-) (sxy/tfoX) [Aggregatibacter actinomycetemcomitans strain 31S]
ATGACAACGGTATCTCAAAGACTCAAGAACGAATTCAAACAACTAGTAGATGGTGAAATCAGTATTAAAAATTTATTCAC
CGGACATGGTATATTTCATTCAGGAATAATGTTTGCACTTCATCAAAACGATAGCATTTTCTTGCGGGCTGAAGATGAGT
TAGTCCCTTACTTAGAAAGTTTAGGTGCTGTAGCTTATTCAATTGATCCCAATAATACGAATAAACTGGCACTCCACCGT
TACTATCAACTTCCTCATTCTATTCGTAAAAATAAGCCGTTATTTGAAAAAACCGTTAAATTGTCTATTCAACAGGCAAA
ATTTAAGAAAGTCGCTGAAGATTTGACAAAAAAAGAGCGAATTAAAGAATTGGCTAATTTTTCCATTAAGCATGAAAGAT
TGCTGGCTAAAATTAATATTTATACGGTAAGTGAATTTCAGAAGATCGGCGCAATTCACAGCTATGTTAGGTTAAAGAAA
CTGGGTGTTTCTGCCAACGTAGAATTGTTATGGACTTTATGCGCCGCATTAAAAAATAAGCATGCTTCGTTGCTTACGGA
AAAGGAAAAATCGGCAATTTTGACTAAATTAAATGTTTTACTTGCAGCAAATGGTTTGCGGAAAGTAAAGGCCTAA

Domains

Predicted by InterProScan.

TfoX N-terminal domain (TfoX_N)

(15-106)

TfoX C-terminal domain (TfoX_C)

(118-196)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Haemophilus influenzae Rd KW20

40.513

92.417

0.374