Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   LIO32_RS10385 Genome accession   NZ_CP085087
Coordinates   2108101..2109195 (+) Length   364 a.a.
NCBI ID   WP_012028050.1    Uniprot ID   A0A0H3N2H6
Organism   Streptococcus suis strain Ssuis_MA2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2103101..2114195
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIO32_RS10360 pgsA 2103629..2104168 (-) 540 WP_012028045.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  LIO32_RS10365 rodZ 2104178..2105026 (-) 849 WP_172046039.1 cytoskeleton protein RodZ -
  LIO32_RS10370 yfmH 2105108..2106391 (-) 1284 WP_012775413.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  LIO32_RS10375 yfmF 2106388..2107641 (-) 1254 WP_012028048.1 EF-P 5-aminopentanol modification-associated protein YfmF -
  LIO32_RS10380 yaaA 2107715..2108098 (+) 384 WP_012028049.1 S4 domain-containing protein YaaA -
  LIO32_RS10385 recF 2108101..2109195 (+) 1095 WP_012028050.1 DNA replication/repair protein RecF Machinery gene
  LIO32_RS10390 guaB 2109467..2110948 (-) 1482 WP_012028051.1 IMP dehydrogenase -
  LIO32_RS10395 trpS 2111180..2112205 (-) 1026 WP_012775414.1 tryptophan--tRNA ligase -
  LIO32_RS10400 - 2112560..2113432 (+) 873 WP_012775460.1 YitT family protein -

Sequence

Protein


Download         Length: 364 a.a.        Molecular weight: 42188.24 Da        Isoelectric Point: 6.9173

>NTDB_id=537353 LIO32_RS10385 WP_012028050.1 2108101..2109195(+) (recF) [Streptococcus suis strain Ssuis_MA2]
MWLERLELQHFRNYNQLDIEFHKGLNVFLGENAQGKTNILESIYVLALTRSHRTRTDKDLLQFQEKELSISGLLHRTSGK
VPLDIHLTDKGRVTKVNHLKQAKLSNYIGHMNVVLFAPEDLQLIKGAPALRRKFIDVELGQIKPLYLSDLSNYNHVLKQR
NTYLKSTDKIDENFLSVLDQQLAEYGSRVIQHRIDFLKKLEEFGNRKVQEISGNREELTIEYQTSIELTDDVNLIDKFLT
ELEKSRKRDLFKKNTGVGPHRDDVAFFINGMNAHYASQGQHRSLVLSLKLAEIELMKEVTREYPILLLDDVMSELDNNRQ
IKLLETITDTIQTFITTTSLDHLHKLPDSLKIFHIESGKVTESE

Nucleotide


Download         Length: 1095 bp        

>NTDB_id=537353 LIO32_RS10385 WP_012028050.1 2108101..2109195(+) (recF) [Streptococcus suis strain Ssuis_MA2]
ATGTGGCTAGAACGATTAGAGTTACAACATTTTCGCAATTACAACCAATTAGATATTGAGTTCCACAAAGGGCTCAATGT
CTTTTTAGGCGAAAACGCCCAAGGAAAAACCAATATTCTAGAATCTATCTATGTTTTAGCCTTAACACGAAGTCATCGAA
CACGGACAGATAAGGACCTACTACAGTTTCAAGAAAAGGAATTATCTATTTCTGGTTTACTCCATCGCACAAGCGGTAAA
GTTCCCCTTGACATTCACTTGACAGACAAGGGACGAGTGACCAAGGTCAACCATCTCAAACAAGCCAAGCTTTCCAACTA
TATCGGCCACATGAATGTTGTTCTCTTCGCCCCTGAAGATTTACAGCTGATAAAAGGTGCGCCTGCTTTGAGAAGAAAGT
TCATCGATGTCGAGCTCGGGCAAATCAAGCCACTCTATCTCTCTGACCTATCGAATTATAACCACGTTTTAAAACAAAGA
AATACTTACCTCAAATCTACAGATAAGATTGATGAGAACTTCCTATCTGTGTTAGATCAGCAACTTGCTGAATATGGTAG
TCGTGTTATCCAACATCGTATTGACTTTCTAAAGAAATTAGAGGAATTCGGAAATAGAAAAGTTCAAGAAATATCTGGCA
ATCGGGAAGAATTGACAATCGAATACCAGACCTCAATCGAATTGACAGATGATGTCAATTTAATTGACAAATTCTTGACG
GAACTAGAAAAGTCTCGTAAACGTGATTTATTTAAGAAAAATACAGGAGTTGGACCACATCGAGATGATGTAGCTTTCTT
TATAAATGGAATGAATGCCCATTATGCTAGCCAAGGTCAGCACCGCAGTCTCGTTCTGTCACTCAAACTAGCTGAAATTG
AGCTGATGAAAGAAGTCACACGAGAGTACCCAATTCTACTCTTAGATGATGTTATGAGTGAGCTGGATAATAATCGTCAA
ATCAAACTATTAGAAACTATTACAGATACGATTCAAACATTTATTACAACGACATCTTTAGACCATTTACATAAGCTACC
TGATAGTTTAAAAATCTTCCATATTGAGTCTGGTAAGGTTACTGAGTCAGAATAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(3-358)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H3N2H6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Streptococcus pneumoniae R6

70.36

99.176

0.698
  recF Bacillus subtilis subsp. subtilis str. 168

43.514

100

0.442