Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   LIO34_RS00800 Genome accession   NZ_CP085085
Coordinates   126414..126821 (+) Length   135 a.a.
NCBI ID   WP_009909093.1    Uniprot ID   -
Organism   Streptococcus suis strain Ssuis_MA8     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 121414..131821
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIO34_RS00775 - 122815..123180 (+) 366 WP_002936568.1 DUF1033 family protein -
  LIO34_RS00780 - 123215..124165 (-) 951 WP_002936565.1 S66 peptidase family protein -
  LIO34_RS00785 comGA 124251..125201 (+) 951 WP_002936562.1 competence type IV pilus ATPase ComGA Machinery gene
  LIO34_RS00790 comGB 125113..126150 (+) 1038 WP_255195823.1 competence type IV pilus assembly protein ComGB Machinery gene
  LIO34_RS00795 comGC 126152..126433 (+) 282 WP_009909092.1 competence type IV pilus major pilin ComGC Machinery gene
  LIO34_RS00800 comGD 126414..126821 (+) 408 WP_009909093.1 competence type IV pilus minor pilin ComGD Machinery gene
  LIO34_RS00805 comGE 126793..127086 (+) 294 WP_024390433.1 competence type IV pilus minor pilin ComGE Machinery gene
  LIO34_RS00810 comGF/cglF 127073..127507 (+) 435 WP_009909097.1 competence type IV pilus minor pilin ComGF Machinery gene
  LIO34_RS00815 comGG 127485..127895 (+) 411 WP_009909099.1 competence type IV pilus minor pilin ComGG -
  LIO34_RS00820 comGH 127952..128905 (+) 954 WP_024409299.1 class I SAM-dependent methyltransferase Machinery gene
  LIO34_RS00825 - 128955..130142 (+) 1188 WP_013730078.1 acetate kinase -
  LIO34_RS00830 - 130457..131053 (+) 597 WP_009909104.1 folate family ECF transporter S component -

Sequence

Protein


Download         Length: 135 a.a.        Molecular weight: 15314.62 Da        Isoelectric Point: 9.9670

>NTDB_id=537082 LIO34_RS00800 WP_009909093.1 126414..126821(+) (comGD) [Streptococcus suis strain Ssuis_MA8]
MLRRKNKAFTLFESLLTLLVVSFLAISLSGTVQTVFRSVQEEIFLWEFEAIYKDSQKLAASSRQAVSLSIGGQEVSNGSQ
IVKVPRNVEILEEKAIRFEEDGGNSSLTKIRFRLSQKIVTYQLYIGSGRYKKTEE

Nucleotide


Download         Length: 408 bp        

>NTDB_id=537082 LIO34_RS00800 WP_009909093.1 126414..126821(+) (comGD) [Streptococcus suis strain Ssuis_MA8]
ATGCTGCGGCGAAAAAATAAGGCTTTTACCCTGTTTGAAAGTCTGCTGACCTTGTTGGTTGTCAGCTTTCTGGCAATCAG
CCTGTCGGGAACAGTACAAACGGTCTTTCGGTCTGTTCAGGAAGAAATTTTTCTCTGGGAATTTGAGGCCATCTATAAAG
ACAGTCAGAAATTGGCAGCCAGTTCCCGCCAAGCAGTTAGTCTTTCTATCGGTGGACAAGAAGTGTCAAATGGCAGTCAG
ATAGTGAAAGTGCCAAGAAACGTGGAAATCTTGGAGGAGAAAGCTATCCGATTTGAAGAAGATGGTGGAAATTCTTCTCT
GACCAAGATTCGTTTTCGCCTTAGTCAAAAAATAGTCACGTATCAATTATATATAGGGAGTGGTCGCTATAAGAAAACAG
AAGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Streptococcus mutans UA140

48.837

95.556

0.467
  comGD Streptococcus mutans UA159

48.837

95.556

0.467
  comGD/cglD Streptococcus pneumoniae TIGR4

47.287

95.556

0.452
  comGD/cglD Streptococcus pneumoniae Rx1

47.287

95.556

0.452
  comGD/cglD Streptococcus pneumoniae D39

47.287

95.556

0.452
  comGD/cglD Streptococcus pneumoniae R6

47.287

95.556

0.452
  comGD/cglD Streptococcus mitis NCTC 12261

46.512

95.556

0.444
  comGD Streptococcus gordonii str. Challis substr. CH1

47.244

94.074

0.444
  comGD/cglD Streptococcus mitis SK321

45.736

95.556

0.437
  comGD Lactococcus lactis subsp. cremoris KW2

38.281

94.815

0.363