Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   JSQ94_RS21395 Genome accession   NZ_CP069630
Coordinates   4515485..4516114 (+) Length   209 a.a.
NCBI ID   WP_000839136.1    Uniprot ID   A0A0D8W3X3
Organism   Escherichia coli strain ESM2.2     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 4510485..4521114
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JSQ94_RS21375 (JSQ94_21185) ycbZ 4510873..4512633 (-) 1761 WP_000156504.1 Lon protease family protein -
  JSQ94_RS21380 (JSQ94_21190) matP 4512819..4513271 (+) 453 WP_000877153.1 macrodomain Ter protein MatP -
  JSQ94_RS21385 (JSQ94_21195) ompA 4513349..4514401 (-) 1053 WP_001528868.1 porin OmpA -
  JSQ94_RS21390 (JSQ94_21200) sulA 4514757..4515266 (-) 510 WP_000288707.1 SOS-induced cell division inhibitor SulA -
  JSQ94_RS21395 (JSQ94_21205) sxy/tfoX 4515485..4516114 (+) 630 WP_000839136.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  JSQ94_RS21400 (JSQ94_21210) yccS 4516077..4518239 (-) 2163 WP_000875041.1 YccS family putative transporter -
  JSQ94_RS21405 (JSQ94_21215) yccF 4518249..4518695 (-) 447 WP_001261236.1 YccF domain-containing protein -
  JSQ94_RS21410 (JSQ94_21220) helD 4518818..4520872 (+) 2055 WP_001443200.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24128.06 Da        Isoelectric Point: 9.2180

>NTDB_id=536253 JSQ94_RS21395 WP_000839136.1 4515485..4516114(+) (sxy/tfoX) [Escherichia coli strain ESM2.2]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAPYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNIRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=536253 JSQ94_RS21395 WP_000839136.1 4515485..4516114(+) (sxy/tfoX) [Escherichia coli strain ESM2.2]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTAACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACCGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATATTCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GAGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0D8W3X3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.043

100

0.99