Detailed information    

insolico Bioinformatically predicted

Overview

Name   ccrB   Type   Machinery gene
Locus tag   I6J34_RS06540 Genome accession   NZ_CP069582
Coordinates   1268399..1270030 (-) Length   543 a.a.
NCBI ID   WP_115359439.1    Uniprot ID   -
Organism   Staphylococcus carnosus strain FDAARGOS_1204     
Function   promote SCCmec transfer (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1263399..1275030
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6J34_RS06525 (I6J34_06525) - 1264999..1266108 (+) 1110 WP_046099758.1 NAD(P)-dependent alcohol dehydrogenase -
  I6J34_RS06530 (I6J34_06530) - 1266956..1267150 (-) 195 WP_142382768.1 hypothetical protein -
  I6J34_RS06535 (I6J34_06535) - 1267586..1267936 (-) 351 WP_046099759.1 SAUGI family uracil-DNA glycosylase inhibitor -
  I6J34_RS06540 (I6J34_06540) ccrB 1268399..1270030 (-) 1632 WP_115359439.1 cassette chromosome recombinase CcrB Machinery gene
  I6J34_RS06545 (I6J34_06545) ccrA 1270051..1271400 (-) 1350 WP_103211957.1 cassette chromosome recombinase CcrA Machinery gene
  I6J34_RS06550 (I6J34_06550) - 1271592..1271867 (-) 276 WP_046099761.1 hypothetical protein -
  I6J34_RS06555 (I6J34_06555) cch1 1271936..1273723 (-) 1788 WP_046099762.1 cassette chromosome replicative helicase -
  I6J34_RS06560 (I6J34_06560) ssb 1273723..1274016 (-) 294 WP_046099763.1 cassette chromosome ssDNA-binding protein -

Sequence

Protein


Download         Length: 543 a.a.        Molecular weight: 62499.46 Da        Isoelectric Point: 9.6504

>NTDB_id=535706 I6J34_RS06540 WP_115359439.1 1268399..1270030(-) (ccrB) [Staphylococcus carnosus strain FDAARGOS_1204]
MQQLKQKRVGIYVRVSTEMQSAEGYSIDGQINQIKEYCNFHHFEVKDIYADRGISGKSMNRPALQRMLHDANKGHIDCVM
VYKTNRLARNTSDLLKIVEDLHKQNVEFFSLSERMEVNTSSGKLMLQILASFSEFERNTILENIYTGQHQRALEGYYQGN
LPLGYNNIPDNKKDLMINQHEANIVKYIFESYAKGHGYRKIANALNHKGYVTKKGNPFSISAVTYILSNPFYIGKIQFAK
YKDWNDKRRKGLNDKPVIAEGKHTPIISQSLWDKVQARKKQVSEKPQVHGKGTNILTGLISCPQCSASMSASTTVNTLKD
GTKKRIRYYSCSNFRNKGSKVCSANSVRADVIEKYVMDQILEIVKSDKVIKQVVERVNQEHQIDTSALNHDIAYKQQQYD
EVQIKLDNLIKTLEDNPDLTSVLKNTIHQYEKQLNDITNQINQLKQQQSAPKTIYDANEIATILRHIFKNIETMDKAQLK
ALYLTVIDHIDIRKDEHHKKQFYVTLKLNHEIIKQLFHNIPLDEVQLSTSSLLLSQTLYLPIS

Nucleotide


Download         Length: 1632 bp        

>NTDB_id=535706 I6J34_RS06540 WP_115359439.1 1268399..1270030(-) (ccrB) [Staphylococcus carnosus strain FDAARGOS_1204]
ATGCAACAACTCAAACAAAAACGTGTCGGTATCTATGTTCGTGTATCAACGGAAATGCAAAGTGCAGAGGGTTATAGTAT
CGACGGTCAAATCAATCAAATCAAAGAATATTGTAACTTCCATCATTTCGAAGTCAAAGATATATACGCTGATCGTGGTA
TTTCAGGAAAGTCTATGAACCGCCCTGCACTTCAACGTATGTTACATGATGCGAATAAAGGTCATATTGATTGTGTTATG
GTGTATAAAACAAATCGACTCGCACGTAATACATCAGACTTACTCAAAATTGTCGAAGATTTGCATAAACAAAATGTCGA
ATTTTTCAGTTTGTCTGAGCGTATGGAAGTCAACACTTCTTCTGGTAAACTCATGTTACAAATACTTGCAAGTTTTTCCG
AATTTGAAAGAAATACCATTTTAGAGAATATTTACACCGGACAACATCAAAGAGCCTTAGAAGGCTATTACCAAGGTAAT
CTTCCTTTAGGATATAATAACATACCAGATAATAAAAAAGATTTGATGATTAATCAGCATGAAGCTAATATTGTGAAATA
TATTTTTGAATCTTACGCCAAAGGTCATGGTTATCGTAAAATTGCCAACGCACTCAATCATAAAGGTTATGTCACTAAGA
AAGGTAATCCTTTTAGTATTTCAGCTGTTACTTATATTCTCTCAAACCCATTCTATATTGGTAAAATTCAATTCGCGAAA
TACAAAGATTGGAATGATAAACGTCGTAAAGGCTTGAATGATAAACCCGTAATTGCCGAAGGCAAACACACCCCTATTAT
TAGCCAATCATTATGGGATAAAGTCCAAGCACGTAAAAAACAAGTAAGTGAAAAACCACAAGTTCATGGTAAAGGAACCA
ATATTTTAACTGGATTAATTTCGTGTCCCCAATGTTCTGCTTCAATGTCTGCGAGCACAACAGTTAATACACTTAAAGAT
GGTACTAAAAAACGCATTCGCTACTATTCGTGTAGTAACTTTCGTAATAAAGGGTCAAAAGTATGTTCTGCGAATAGTGT
CAGAGCCGATGTAATTGAAAAATATGTTATGGATCAAATACTCGAAATTGTTAAAAGCGACAAGGTTATCAAGCAAGTCG
TTGAGCGTGTCAATCAAGAACATCAAATTGATACGTCTGCACTCAATCATGATATCGCATATAAGCAACAACAATATGAT
GAGGTCCAAATCAAATTAGATAACTTGATAAAAACGCTTGAAGATAATCCAGACTTAACATCTGTGCTTAAAAATACGAT
TCATCAGTATGAAAAACAACTCAATGACATCACAAATCAAATCAATCAACTTAAGCAACAACAAAGTGCTCCCAAAACAA
TATATGACGCTAATGAGATTGCGACTATATTACGTCATATATTCAAAAATATCGAAACCATGGATAAAGCACAACTCAAA
GCACTATACCTTACGGTCATAGACCACATTGATATTCGTAAAGACGAACATCATAAAAAACAGTTCTACGTCACATTAAA
ACTCAATCATGAAATCATTAAACAACTCTTCCATAATATCCCTCTCGACGAAGTGCAACTCAGCACTTCGTCTTTATTAT
TATCTCAAACACTCTATTTGCCTATCTCATAA

Domains

Predicted by InterProScan.

Resolvase, N terminal domain (Resolvase)

(11-155)

Recombinase (Recombinase)

(180-280)

Ogr/Delta-like zinc finger (Ogr_Delta)

(302-356)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccrB Staphylococcus aureus N315

82.657

99.816

0.825