Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilY2   Type   Machinery gene
Locus tag   I6J44_RS01040 Genome accession   NZ_CP069537
Coordinates   188749..189231 (-) Length   160 a.a.
NCBI ID   WP_002116770.1    Uniprot ID   A0A009RUX0
Organism   Acinetobacter pittii strain FDAARGOS_1214     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 183749..194231
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6J44_RS01005 (I6J44_01005) - 183835..184866 (+) 1032 WP_016802752.1 lipase secretion chaperone -
  I6J44_RS01010 (I6J44_01010) lip 184982..185923 (+) 942 WP_002116859.1 lipase family alpha/beta hydrolase -
  I6J44_RS01015 (I6J44_01015) rplS 185974..186342 (-) 369 WP_002116654.1 50S ribosomal protein L19 -
  I6J44_RS01020 (I6J44_01020) trmD 186562..187317 (-) 756 WP_002116964.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  I6J44_RS01025 (I6J44_01025) rimM 187360..187908 (-) 549 WP_002116736.1 ribosome maturation factor RimM -
  I6J44_RS01030 (I6J44_01030) rpsP 187928..188179 (-) 252 WP_000260334.1 30S ribosomal protein S16 -
  I6J44_RS01035 (I6J44_01035) pilE 188327..188752 (-) 426 WP_002117055.1 type IV pilin protein Machinery gene
  I6J44_RS01040 (I6J44_01040) pilY2 188749..189231 (-) 483 WP_002116770.1 type IV pilin protein Machinery gene
  I6J44_RS01045 (I6J44_01045) pilY1 189242..193096 (-) 3855 WP_002116849.1 PilC/PilY family type IV pilus protein Machinery gene
  I6J44_RS01050 (I6J44_01050) pilX 193108..193947 (-) 840 WP_204086186.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 17520.76 Da        Isoelectric Point: 8.4721

>NTDB_id=535407 I6J44_RS01040 WP_002116770.1 188749..189231(-) (pilY2) [Acinetobacter pittii strain FDAARGOS_1214]
MNKYYIQRFNQGVTLIELMVVIVIVAIFASIAIPSYQSYSRRATASAAKGEILKLAEQLERHKSKNFTYRGFTTTSVTLP
RGGYTIEISDDTTTGNLLTNAAANGQTWVIKATTTDSRNFNFIAKNSGLRCQSLTATAVDNDCGGAVTCNVCETNSENWQ

Nucleotide


Download         Length: 483 bp        

>NTDB_id=535407 I6J44_RS01040 WP_002116770.1 188749..189231(-) (pilY2) [Acinetobacter pittii strain FDAARGOS_1214]
ATGAATAAATACTATATCCAACGGTTTAATCAGGGTGTTACCTTGATTGAGCTCATGGTTGTCATCGTGATTGTCGCTAT
TTTTGCTTCGATTGCTATCCCTTCATATCAAAGTTATAGCCGCAGAGCGACTGCCTCTGCTGCTAAAGGTGAAATTCTAA
AATTGGCAGAACAGTTGGAACGGCATAAATCCAAGAACTTTACCTATAGAGGATTTACTACGACATCTGTAACTTTGCCA
CGGGGTGGTTATACGATTGAAATTAGTGATGATACGACGACAGGAAATTTATTGACGAATGCTGCTGCAAATGGGCAGAC
ATGGGTCATTAAAGCGACAACTACAGATTCAAGAAATTTTAATTTTATTGCTAAGAATTCAGGTTTGCGTTGCCAAAGTT
TAACAGCTACGGCTGTTGATAATGACTGTGGTGGAGCAGTCACTTGCAATGTATGTGAAACAAATAGTGAGAATTGGCAA
TGA

Domains

Predicted by InterproScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(34-115)

Prokaryotic N-terminal methylation motif (N_methyl)

(10-32)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A009RUX0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilY2 Acinetobacter baumannii D1279779

93.75

100

0.938
  comE Acinetobacter baylyi ADP1

40.678

100

0.45