Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   I6J44_RS01035 Genome accession   NZ_CP069537
Coordinates   188327..188752 (-) Length   141 a.a.
NCBI ID   WP_002117055.1    Uniprot ID   -
Organism   Acinetobacter pittii strain FDAARGOS_1214     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 183327..193752
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6J44_RS01005 (I6J44_01005) - 183835..184866 (+) 1032 WP_016802752.1 lipase secretion chaperone -
  I6J44_RS01010 (I6J44_01010) lip 184982..185923 (+) 942 WP_002116859.1 lipase family alpha/beta hydrolase -
  I6J44_RS01015 (I6J44_01015) rplS 185974..186342 (-) 369 WP_002116654.1 50S ribosomal protein L19 -
  I6J44_RS01020 (I6J44_01020) trmD 186562..187317 (-) 756 WP_002116964.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  I6J44_RS01025 (I6J44_01025) rimM 187360..187908 (-) 549 WP_002116736.1 ribosome maturation factor RimM -
  I6J44_RS01030 (I6J44_01030) rpsP 187928..188179 (-) 252 WP_000260334.1 30S ribosomal protein S16 -
  I6J44_RS01035 (I6J44_01035) pilE 188327..188752 (-) 426 WP_002117055.1 type IV pilin protein Machinery gene
  I6J44_RS01040 (I6J44_01040) pilY2 188749..189231 (-) 483 WP_002116770.1 type IV pilin protein Machinery gene
  I6J44_RS01045 (I6J44_01045) pilY1 189242..193096 (-) 3855 WP_002116849.1 PilC/PilY family type IV pilus protein Machinery gene

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15172.33 Da        Isoelectric Point: 7.1292

>NTDB_id=535406 I6J44_RS01035 WP_002117055.1 188327..188752(-) (pilE) [Acinetobacter pittii strain FDAARGOS_1214]
MKNGFTLIELMIVVAIIAILAAIATPSYLQYLRKGHRTAVQSEMMNIAQTLESEKIVHNRYPSNATITSVYGSSVSPQQG
QALYNLAFASITDSSWVLTATPIATSSQAGDGIICLNDQGQKFWAKGATDCALSATSNWLQ

Nucleotide


Download         Length: 426 bp        

>NTDB_id=535406 I6J44_RS01035 WP_002117055.1 188327..188752(-) (pilE) [Acinetobacter pittii strain FDAARGOS_1214]
ATGAAGAATGGTTTTACTTTAATAGAACTCATGATTGTAGTCGCAATAATTGCAATTTTAGCGGCTATAGCTACACCTTC
GTATTTGCAGTATTTACGCAAAGGACATCGTACAGCTGTTCAATCTGAAATGATGAATATTGCCCAAACATTAGAATCAG
AAAAAATAGTTCACAATCGCTATCCATCGAATGCAACGATTACATCGGTTTATGGTTCTAGTGTCAGTCCTCAACAAGGC
CAAGCCTTATATAACTTAGCTTTCGCTAGCATAACTGATTCAAGTTGGGTGTTAACTGCTACACCTATTGCTACTAGTTC
TCAAGCTGGTGATGGGATCATTTGTCTTAATGATCAAGGGCAAAAATTTTGGGCAAAAGGTGCAACTGATTGTGCGTTAT
CTGCCACATCAAATTGGCTACAGTAA

Domains

Predicted by InterproScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(26-115)

Prokaryotic N-terminal methylation motif (N_methyl)

(2-24)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Acinetobacter baumannii D1279779

85.106

100

0.851
  comF Acinetobacter baylyi ADP1

52.143

99.291

0.518