Detailed information    

insolico Bioinformatically predicted

Overview

Name   ymcA   Type   Regulator
Locus tag   U722_RS08460 Genome accession   NC_023073
Coordinates   1737075..1737506 (+) Length   143 a.a.
NCBI ID   WP_003154113.1    Uniprot ID   A7Z4X3
Organism   Bacillus amyloliquefaciens LFB112     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 1732075..1742506
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U722_RS08440 (U722_08895) spoVS 1732644..1732904 (+) 261 WP_003154135.1 stage V sporulation protein SpoVS -
  U722_RS08445 (U722_08905) tdh 1733163..1734209 (+) 1047 WP_024085310.1 L-threonine 3-dehydrogenase -
  U722_RS08450 (U722_08910) - 1734222..1735400 (+) 1179 WP_088037143.1 glycine C-acetyltransferase -
  U722_RS08455 (U722_08915) miaB 1735543..1737072 (+) 1530 WP_024085311.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  U722_RS08460 (U722_08920) ymcA 1737075..1737506 (+) 432 WP_003154113.1 RicAFT regulatory complex protein RicA family protein Regulator
  U722_RS08465 (U722_08925) cotE 1737760..1738305 (+) 546 WP_003154111.1 outer spore coat protein CotE -
  U722_RS08470 (U722_08930) hexA 1738424..1741009 (+) 2586 WP_024085312.1 DNA mismatch repair protein MutS Machinery gene

Sequence

Protein


Download         Length: 143 a.a.        Molecular weight: 16082.22 Da        Isoelectric Point: 5.0213

>NTDB_id=53362 U722_RS08460 WP_003154113.1 1737075..1737506(+) (ymcA) [Bacillus amyloliquefaciens LFB112]
MTLYSKKDIVQQARNLAKMISETEEVDFFKRAEAQINENEKVSAIINQIKTLQKQAVNLKHYEKLEALKQVESKIDALQE
ELEGIPIIQEFRDSQIEVNDLLQLVAHTISNQVTNEIITSTGGNLLTGETGSKVKHSNNSCSI

Nucleotide


Download         Length: 432 bp        

>NTDB_id=53362 U722_RS08460 WP_003154113.1 1737075..1737506(+) (ymcA) [Bacillus amyloliquefaciens LFB112]
ATGACGCTTTACTCAAAGAAAGACATTGTACAGCAGGCTAGGAACCTTGCGAAAATGATTTCTGAAACAGAAGAAGTTGA
TTTTTTCAAACGCGCCGAGGCGCAGATTAACGAAAATGAAAAAGTCTCTGCGATTATTAATCAGATTAAAACCCTGCAAA
AGCAAGCCGTTAACCTGAAGCACTACGAAAAGCTTGAAGCGCTGAAGCAAGTGGAAAGTAAAATTGACGCCCTGCAGGAA
GAGCTTGAAGGGATTCCGATCATTCAGGAATTCAGAGATTCCCAGATTGAGGTCAATGACCTTCTTCAGCTTGTCGCACA
TACGATCTCAAATCAGGTGACAAACGAAATTATTACATCTACCGGAGGCAACCTGCTGACGGGAGAAACCGGTTCAAAAG
TAAAACATTCGAATAACAGCTGTTCTATTTAA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(9-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A7Z4X3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ymcA Bacillus subtilis subsp. subtilis str. 168

91.608

100

0.916

Multiple sequence alignment