Detailed information    

insolico Bioinformatically predicted

Overview

Name   mecA   Type   Regulator
Locus tag   HMPREF1038_RS06600 Genome accession   NC_018630
Coordinates   1245680..1246417 (-) Length   245 a.a.
NCBI ID   WP_000782680.1    Uniprot ID   A0A0B7L5A1
Organism   Streptococcus pneumoniae gamPNI0373     
Function   degradation of ComW (predicted from homology)   
Competence regulation

Genomic Context

Location: 1240680..1251417
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HMPREF1038_RS06580 (HMPREF1038_01346) msrB 1242139..1243077 (-) 939 WP_000818203.1 peptide-methionine (R)-S-oxide reductase MsrB -
  HMPREF1038_RS13215 (HMPREF1038_01347) - 1243144..1243296 (-) 153 WP_025172493.1 hypothetical protein -
  HMPREF1038_RS06590 (HMPREF1038_01348) thrB 1243372..1244241 (-) 870 WP_000692438.1 homoserine kinase -
  HMPREF1038_RS06595 (HMPREF1038_01349) - 1244243..1245529 (-) 1287 WP_000216377.1 homoserine dehydrogenase -
  HMPREF1038_RS06600 (HMPREF1038_01350) mecA 1245680..1246417 (-) 738 WP_000782680.1 adaptor protein MecA Regulator
  HMPREF1038_RS06605 (HMPREF1038_01351) - 1246617..1247651 (-) 1035 WP_001844516.1 hypothetical protein -
  HMPREF1038_RS06610 (HMPREF1038_01352) - 1247680..1249113 (-) 1434 WP_001813454.1 O-antigen polysaccharide polymerase Wzy family protein -
  HMPREF1038_RS06615 (HMPREF1038_01353) - 1249129..1250115 (-) 987 WP_000446977.1 glycosyltransferase family 2 protein -
  HMPREF1038_RS06620 (HMPREF1038_01354) - 1250117..1251220 (-) 1104 WP_000225903.1 glycosyltransferase -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 28409.24 Da        Isoelectric Point: 4.0199

>NTDB_id=53347 HMPREF1038_RS06600 WP_000782680.1 1245680..1246417(-) (mecA) [Streptococcus pneumoniae gamPNI0373]
MKMKQISDTTLKITMSLEDLMDRGMEIADFLVPQEKTEEFFYAILDELEMPDSFLDTGMLSFRVTPKPDKVDVFVTKSKI
DQNLDFEDLSDLPDMEELAQMSPDEFIKTLEKSIADKTKDDIEAIQSLEQVEAKEEEQEQAEQEAESKKEPYIYYILSFA
KLADLVVFAKTVTFEMETSELYKMNERYYLTILVDIENHPSPYPAWLLARMREFADDSDISRSVLQEYGQVLMSHDAVLN
LQKIG

Nucleotide


Download         Length: 738 bp        

>NTDB_id=53347 HMPREF1038_RS06600 WP_000782680.1 1245680..1246417(-) (mecA) [Streptococcus pneumoniae gamPNI0373]
ATGAAAATGAAACAAATTAGTGATACAACTTTAAAAATCACGATGTCTTTAGAGGATTTGATGGATCGTGGAATGGAGAT
TGCTGACTTTCTCGTTCCTCAAGAAAAAACAGAAGAGTTCTTTTATGCTATCTTGGATGAGCTAGAGATGCCTGATAGCT
TTCTGGATACAGGCATGTTGAGCTTCCGTGTGACTCCAAAACCTGATAAGGTAGATGTCTTTGTGACCAAGTCAAAGATT
GACCAAAATCTAGATTTTGAAGACTTATCGGATTTGCCAGATATGGAAGAATTGGCTCAAATGTCTCCAGATGAATTTAT
CAAAACCCTGGAAAAAAGCATCGCAGACAAAACCAAGGATGATATCGAAGCCATTCAATCTCTTGAGCAAGTTGAAGCCA
AGGAAGAAGAGCAAGAGCAGGCTGAACAAGAAGCTGAGAGTAAGAAAGAACCTTACATCTACTACATCCTTTCTTTTGCT
AAGTTGGCTGACTTGGTAGTTTTTGCCAAGACAGTGACTTTTGAAATGGAAACTTCTGAACTCTACAAAATGAACGAGCG
CTATTATTTGACCATTTTAGTGGATATTGAAAATCATCCAAGCCCATATCCAGCTTGGCTGTTGGCCCGTATGCGCGAGT
TTGCAGACGATAGTGATATCAGTCGCTCAGTCTTACAAGAGTATGGTCAAGTCTTGATGAGTCACGATGCAGTGCTCAAT
CTGCAAAAAATCGGCTAA

Domains

Predicted by InterproScan.

Negative regulator of genetic competence (MecA) (MecA)

(1-239)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0B7L5A1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  mecA Streptococcus pneumoniae Rx1

99.184

100

0.992
  mecA Streptococcus pneumoniae D39

99.184

100

0.992
  mecA Streptococcus pneumoniae R6

99.184

100

0.992
  mecA Streptococcus pneumoniae TIGR4

98.776

100

0.988
  mecA Streptococcus thermophilus LMD-9

47.791

100

0.486
  mecA Streptococcus thermophilus LMG 18311

47.39

100

0.482
  mecA Streptococcus mutans UA159

48.163

100

0.482

Multiple sequence alignment