Detailed information    

insolico Bioinformatically predicted

Overview

Name   lrpC   Type   Machinery gene
Locus tag   U722_RS02210 Genome accession   NC_023073
Coordinates   462618..463052 (+) Length   144 a.a.
NCBI ID   WP_024084896.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens LFB112     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 457618..468052
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U722_RS02180 (U722_02245) - 458291..459151 (+) 861 WP_015388697.1 SDR family oxidoreductase -
  U722_RS02185 (U722_02250) - 459164..459667 (+) 504 WP_003156273.1 D-lyxose/D-mannose family sugar isomerase -
  U722_RS02190 (U722_02255) - 459754..460377 (+) 624 WP_014304361.1 GNAT family N-acetyltransferase -
  U722_RS02195 (U722_02260) - 460384..460806 (+) 423 WP_003156270.1 pyridoxamine 5'-phosphate oxidase family protein -
  U722_RS02200 (U722_02265) - 461305..462114 (+) 810 WP_014304362.1 lipid II flippase Amj family protein -
  U722_RS02205 (U722_02270) - 462151..462441 (-) 291 WP_003156265.1 DUF3817 domain-containing protein -
  U722_RS02210 (U722_02275) lrpC 462618..463052 (+) 435 WP_024084896.1 Lrp/AsnC family transcriptional regulator Machinery gene
  U722_RS02215 (U722_02280) - 463116..465302 (+) 2187 WP_024084897.1 DNA topoisomerase III -
  U722_RS02220 (U722_02285) - 465535..466620 (+) 1086 WP_024084898.1 hypothetical protein -
  U722_RS02225 (U722_02290) - 466601..467449 (+) 849 WP_014304365.1 diguanylate cyclase domain-containing protein -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 16446.04 Da        Isoelectric Point: 8.2515

>NTDB_id=53311 U722_RS02210 WP_024084896.1 462618..463052(+) (lrpC) [Bacillus amyloliquefaciens LFB112]
MKLDNVDLSIIKELQQDSRLSMRELGRKIKLSAPSVTERVRQLESFGVIKRYTLDIDQKKIGLPVSCIVEATVKNGKYDQ
FKTYIQSIPNIEFCFRVAGAACYMLKINADSLETIEHFINRTSPYAQTVTHVIFSEIDTKNVLD

Nucleotide


Download         Length: 435 bp        

>NTDB_id=53311 U722_RS02210 WP_024084896.1 462618..463052(+) (lrpC) [Bacillus amyloliquefaciens LFB112]
ATGAAACTAGATAATGTGGATCTGAGCATCATTAAAGAGCTGCAGCAGGACAGCCGCCTGTCCATGCGGGAGCTGGGCAG
AAAAATCAAATTGTCAGCCCCGTCCGTCACAGAGCGTGTCAGACAGCTTGAATCCTTCGGCGTTATTAAGCGCTATACAT
TGGACATTGATCAAAAAAAGATCGGGCTCCCCGTCTCCTGCATTGTCGAAGCGACGGTGAAAAACGGAAAATATGATCAA
TTCAAAACCTACATTCAATCCATTCCCAACATTGAATTTTGTTTTCGGGTCGCCGGGGCGGCGTGTTATATGCTGAAGAT
TAACGCGGACAGTCTGGAAACGATCGAACACTTCATCAACCGCACCTCTCCGTATGCCCAAACCGTGACCCACGTCATTT
TCTCAGAAATTGACACAAAAAACGTCCTCGATTAG

Domains

Predicted by InterProScan.

Lrp/AsnC ligand binding domain (AsnC_trans_reg)

(69-135)

AsnC-type helix-turn-helix domain (HTH_AsnC-type)

(3-44)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lrpC Bacillus subtilis subsp. subtilis str. 168

81.56

97.917

0.799

Multiple sequence alignment