Detailed information NTG0530973

Bioinformatically predicted

Overview

• Name: recF
• Type: Machinery gene
• Locus tag: K8227_RS10360
• Genome accession: NZ_CP082948
• Coordinates: 2123569..2124663 (+)
• Length: 364 a.a.
• NCBI ID: WP_012028050.1
• Uniprot ID: A0A0H3N2H6
• Organism: Streptococcus suis strain SZ1908
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2118569..2129663

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
K8227_RS10335 (K8227_10310)	pgsA	2119088..2119627 (-)	540	WP_012028045.1	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	-
K8227_RS10340 (K8227_10315)	rodZ	2119637..2120494 (-)	858	WP_012028600.1	cytoskeleton protein RodZ	-
K8227_RS10345 (K8227_10320)	yfmH	2120576..2121859 (-)	1284	WP_012775413.1	EF-P 5-aminopentanol modification-associated protein YfmH	-
K8227_RS10350 (K8227_10325)	yfmF	2121856..2123109 (-)	1254	WP_012028048.1	EF-P 5-aminopentanol modification-associated protein YfmF	-
K8227_RS10355 (K8227_10330)	yaaA	2123183..2123566 (+)	384	WP_012028049.1	S4 domain-containing protein YaaA	-
K8227_RS10360 (K8227_10335)	recF	2123569..2124663 (+)	1095	WP_012028050.1	DNA replication/repair protein RecF	Machinery gene
K8227_RS10365 (K8227_10340)	guaB	2124935..2126416 (-)	1482	WP_012028051.1	IMP dehydrogenase	-
K8227_RS10370 (K8227_10345)	trpS	2126648..2127673 (-)	1026	WP_012775414.1	tryptophan--tRNA ligase	-
K8227_RS10375 (K8227_10350)	-	2128028..2128900 (+)	873	WP_012775460.1	YitT family protein	-

Sequence

Protein

• Length: 364 a.a.
• Molecular weight: 42188.24 Da
• Isoelectric Point: 6.9173

>NTDB_id=530973 K8227_RS10360 WP_012028050.1 2123569..2124663(+) (recF) [Streptococcus suis strain SZ1908]
MWLERLELQHFRNYNQLDIEFHKGLNVFLGENAQGKTNILESIYVLALTRSHRTRTDKDLLQFQEKELSISGLLHRTSGK
VPLDIHLTDKGRVTKVNHLKQAKLSNYIGHMNVVLFAPEDLQLIKGAPALRRKFIDVELGQIKPLYLSDLSNYNHVLKQR
NTYLKSTDKIDENFLSVLDQQLAEYGSRVIQHRIDFLKKLEEFGNRKVQEISGNREELTIEYQTSIELTDDVNLIDKFLT
ELEKSRKRDLFKKNTGVGPHRDDVAFFINGMNAHYASQGQHRSLVLSLKLAEIELMKEVTREYPILLLDDVMSELDNNRQ
IKLLETITDTIQTFITTTSLDHLHKLPDSLKIFHIESGKVTESE

Nucleotide

• Length: 1095 bp

>NTDB_id=530973 K8227_RS10360 WP_012028050.1 2123569..2124663(+) (recF) [Streptococcus suis strain SZ1908]
ATGTGGCTAGAACGATTAGAGTTACAACATTTTCGCAATTACAACCAATTAGATATTGAGTTCCACAAAGGGCTCAATGT
CTTTTTAGGCGAAAACGCCCAAGGAAAAACCAATATTCTAGAATCTATCTATGTTTTAGCCTTAACACGAAGTCATCGAA
CACGGACAGATAAGGACCTACTACAGTTTCAAGAAAAGGAATTATCTATTTCTGGTTTACTCCATCGCACAAGCGGTAAA
GTTCCCCTTGACATTCACTTGACAGACAAGGGACGAGTGACCAAGGTCAACCATCTCAAACAAGCCAAGCTTTCCAACTA
TATCGGCCACATGAATGTTGTTCTCTTCGCCCCTGAAGATTTACAGCTGATAAAAGGTGCGCCTGCTTTGAGAAGAAAGT
TCATCGATGTCGAGCTCGGGCAAATCAAGCCACTCTATCTCTCTGACCTATCGAATTATAACCACGTTTTAAAACAAAGA
AATACTTACCTCAAATCTACAGATAAGATTGATGAGAACTTCCTATCTGTGTTAGATCAGCAACTTGCTGAATATGGTAG
TCGTGTTATCCAACATCGTATTGACTTTCTAAAGAAATTAGAGGAATTCGGAAATAGAAAAGTTCAAGAAATATCTGGCA
ATCGGGAAGAATTGACAATCGAATACCAGACCTCAATCGAATTGACAGATGATGTCAATTTAATTGACAAATTCTTGACG
GAACTAGAAAAGTCTCGTAAACGTGATTTATTTAAGAAAAATACAGGAGTTGGACCACATCGAGATGATGTAGCTTTCTT
TATAAATGGAATGAATGCCCATTATGCTAGCCAAGGTCAGCACCGCAGTCTCGTTCTGTCACTCAAACTAGCTGAAATTG
AGCTGATGAAAGAAGTCACACGAGAGTACCCAATTCTACTCTTAGATGATGTTATGAGTGAGCTGGATAATAATCGTCAA
ATCAAACTATTAGAAACTATTACAGATACGATTCAAACATTTATTACAACGACATCTTTAGACCATTTACATAAGCTACC
TGATAGTTTAAAAATCTTCCATATTGAGTCTGGTAAGGTTACTGAGTCAGAATAA

Domains

Predicted by InterProScan.

• RecF/RecN/SMC N terminal domain (SMC_N) (3-358)

3D structure

• AlphaFold DB: A0A0H3N2H6

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recF	Streptococcus pneumoniae R6	70.36	99.176	0.698
recF	Bacillus subtilis subsp. subtilis str. 168	43.514	100	0.442