Detailed information NTG0053012

Bioinformatically predicted

Overview

• Name: ssbA
• Type: Machinery gene
• Locus tag: LMOSLCC2372_RS12275
• Genome accession: NC_018588
• Coordinates: 2405201..2405683 (-)
• Length: 160 a.a.
• NCBI ID: WP_014930199.1
• Uniprot ID: -
• Organism: Listeria monocytogenes SLCC2372
• Function: ssDNA binding (predicted from homology) DNA processing

Genomic Context

Location: 2400201..2410683

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LMOSLCC2372_RS12245 (LMOSLCC2372_2360)	-	2401060..2402379 (-)	1320	WP_014930196.1	PBSX family phage terminase large subunit	-
LMOSLCC2372_RS12250 (LMOSLCC2372_2361)	-	2402315..2403184 (-)	870	WP_014601504.1	terminase small subunit	-
LMOSLCC2372_RS12255 (LMOSLCC2372_2362)	-	2403373..2403654 (-)	282	WP_231854893.1	hypothetical protein	-
LMOSLCC2372_RS12260 (LMOSLCC2372_2363)	-	2403996..2404448 (-)	453	WP_014601506.1	ArpU family phage packaging/lysis transcriptional regulator	-
LMOSLCC2372_RS12265 (LMOSLCC2372_2364)	-	2404513..2405010 (-)	498	WP_003733720.1	Holliday junction resolvase RecU	-
LMOSLCC2372_RS12270 (LMOSLCC2372_2365)	-	2405000..2405182 (-)	183	WP_003733721.1	hypothetical protein	-
LMOSLCC2372_RS12275 (LMOSLCC2372_2366)	ssbA	2405201..2405683 (-)	483	WP_014930199.1	single-stranded DNA-binding protein	Machinery gene
LMOSLCC2372_RS12280 (LMOSLCC2372_2367)	-	2405684..2405863 (-)	180	WP_014930200.1	hypothetical protein	-
LMOSLCC2372_RS12290 (LMOSLCC2372_2369)	-	2406123..2406584 (-)	462	WP_014930202.1	hypothetical protein	-
LMOSLCC2372_RS12295 (LMOSLCC2372_2370)	-	2406581..2407147 (-)	567	WP_077915353.1	DUF1642 domain-containing protein	-
LMOSLCC2372_RS12300	-	2407225..2407440 (-)	216	WP_003731843.1	hypothetical protein	-
LMOSLCC2372_RS15720 (LMOSLCC2372_2371)	-	2407452..2407619 (-)	168	WP_014930204.1	hypothetical protein	-
LMOSLCC2372_RS12305 (LMOSLCC2372_2372)	-	2407624..2408079 (-)	456	WP_014930205.1	class I SAM-dependent methyltransferase	-
LMOSLCC2372_RS12310 (LMOSLCC2372_2373)	-	2408076..2409047 (-)	972	WP_014930206.1	phage replisome organizer N-terminal domain-containing protein	-
LMOSLCC2372_RS12315 (LMOSLCC2372_2374)	-	2409064..2409702 (-)	639	WP_014601516.1	ERF family protein	-
LMOSLCC2372_RS12320 (LMOSLCC2372_2375)	-	2409707..2410183 (-)	477	WP_009930471.1	siphovirus Gp157 family protein	-
LMOSLCC2372_RS12325 (LMOSLCC2372_2376)	-	2410180..2410374 (-)	195	WP_009930470.1	hypothetical protein	-
LMOSLCC2372_RS15755 (LMOSLCC2372_2377)	-	2410470..2410610 (-)	141	WP_157862701.1	hypothetical protein	-

Sequence

Protein

• Length: 160 a.a.
• Molecular weight: 17622.38 Da
• Isoelectric Point: 4.8008

>NTDB_id=53012 LMOSLCC2372_RS12275 WP_014930199.1 2405201..2405683(-) (ssbA) [Listeria monocytogenes SLCC2372]
MMNRVVLVGRLTKDPELRYTPAGAAVATFTLAVNRPFKNGQGEQEADFIQCVVWRKPAENVANFLKKGSLTGVDGRVQTR
NYEGDDGKRVYVTEIVAESVQFLEPKQNAVEGSTPNNNQNEANYSNNNKNGSYRASSSQNSDSFANEGKPIDISDDDLPF

Nucleotide

• Length: 483 bp

>NTDB_id=53012 LMOSLCC2372_RS12275 WP_014930199.1 2405201..2405683(-) (ssbA) [Listeria monocytogenes SLCC2372]
ATGATGAATCGTGTCGTGCTCGTAGGACGCTTAACTAAAGATCCTGAATTACGTTATACACCAGCTGGTGCAGCAGTTGC
AACTTTTACACTAGCTGTCAATCGCCCTTTCAAAAACGGGCAAGGAGAGCAAGAAGCTGATTTTATTCAATGTGTAGTTT
GGCGTAAACCAGCAGAAAACGTTGCTAATTTCTTGAAAAAAGGAAGTTTAACAGGCGTTGATGGTCGAGTTCAAACTCGT
AACTATGAGGGGGACGACGGTAAGCGCGTTTATGTGACGGAAATAGTGGCCGAGAGTGTTCAATTTTTGGAACCTAAGCA
GAACGCTGTAGAAGGCTCTACACCGAATAATAATCAAAACGAAGCTAATTATTCAAATAACAATAAAAACGGCTCATATC
GAGCTAGTTCGAGCCAGAATAGTGATTCATTTGCAAACGAAGGTAAGCCGATTGATATTTCAGATGACGATTTGCCATTT
TGA

Domains

Predicted by InterproScan.

• Single-strand binding protein family (SSB) (2-103)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ssbA	Bacillus subtilis subsp. subtilis str. 168	64.535	100	0.694
ssb	Latilactobacillus sakei subsp. sakei 23K	55.294	100	0.587
ssbB	Bacillus subtilis subsp. subtilis str. 168	64.151	66.25	0.425