Detailed information
Bioinformatically predicted
Overview
| Name | recA | Type | Machinery gene |
| Locus tag | JMW49_RS01940 | Genome accession | NZ_CP068561 |
| Coordinates | 432406..433452 (-) | Length | 348 a.a. |
| NCBI ID | WP_003419530.1 | Uniprot ID | A0AAX3GVV5 |
| Organism | Clostridioides difficile strain CD9301 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 390796..458316 | 432406..433452 | within | 0 |
Gene organization within MGE regions
Location: 390796..458316
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JMW49_RS01745 (JMW49_01745) | - | 391069..391491 (-) | 423 | WP_003419651.1 | phage baseplate protein | - |
| JMW49_RS01750 (JMW49_01750) | - | 391491..393944 (-) | 2454 | WP_003419649.1 | hypothetical protein | - |
| JMW49_RS01755 (JMW49_01755) | - | 394138..394584 (-) | 447 | WP_003419647.1 | phage tail assembly chaperone | - |
| JMW49_RS01760 (JMW49_01760) | - | 394698..395126 (-) | 429 | WP_003419646.1 | phage tail tube protein | - |
| JMW49_RS01765 (JMW49_01765) | - | 395140..396204 (-) | 1065 | WP_003419645.1 | phage tail sheath subtilisin-like domain-containing protein | - |
| JMW49_RS01770 (JMW49_01770) | - | 396209..396652 (-) | 444 | WP_003419644.1 | phage tail terminator family protein | - |
| JMW49_RS01775 (JMW49_01775) | - | 396901..397341 (-) | 441 | WP_003419643.1 | hypothetical protein | - |
| JMW49_RS01780 (JMW49_01780) | - | 397445..397642 (-) | 198 | WP_003419641.1 | helix-turn-helix transcriptional regulator | - |
| JMW49_RS01785 (JMW49_01785) | - | 397811..398131 (+) | 321 | WP_003419639.1 | XRE family transcriptional regulator | - |
| JMW49_RS01790 (JMW49_01790) | - | 398213..398719 (+) | 507 | WP_003419636.1 | ImmA/IrrE family metallo-endopeptidase | - |
| JMW49_RS01795 (JMW49_01795) | - | 399420..400175 (+) | 756 | WP_009889131.1 | peptidylprolyl isomerase | - |
| JMW49_RS01800 (JMW49_01800) | - | 400318..400746 (-) | 429 | WP_009889129.1 | CBS domain-containing protein | - |
| JMW49_RS01805 (JMW49_01805) | - | 401167..401367 (-) | 201 | WP_003419624.1 | cold-shock protein | - |
| JMW49_RS01810 (JMW49_01810) | - | 401550..402704 (-) | 1155 | WP_009905420.1 | amidase domain-containing protein | - |
| JMW49_RS01815 (JMW49_01815) | - | 402955..403776 (+) | 822 | WP_003419615.1 | pyridoxamine kinase | - |
| JMW49_RS01820 (JMW49_01820) | - | 403852..405243 (-) | 1392 | WP_029158131.1 | sensor histidine kinase | - |
| JMW49_RS01825 (JMW49_01825) | - | 405377..406147 (-) | 771 | WP_003419609.1 | lantibiotic immunity ABC transporter MutG family permease subunit | - |
| JMW49_RS01830 (JMW49_01830) | - | 406149..406868 (-) | 720 | WP_003419603.1 | lantibiotic immunity ABC transporter MutE/EpiE family permease subunit | - |
| JMW49_RS01835 (JMW49_01835) | - | 406870..407577 (-) | 708 | WP_009905418.1 | lantibiotic protection ABC transporter ATP-binding protein | - |
| JMW49_RS01840 (JMW49_01840) | - | 407697..408233 (-) | 537 | WP_003419598.1 | hypothetical protein | - |
| JMW49_RS01845 (JMW49_01845) | - | 408335..409405 (-) | 1071 | WP_003419596.1 | DUF4097 family beta strand repeat-containing protein | - |
| JMW49_RS01850 (JMW49_01850) | - | 409398..410456 (-) | 1059 | WP_003419595.1 | DUF1700 domain-containing protein | - |
| JMW49_RS01855 (JMW49_01855) | - | 410443..410775 (-) | 333 | WP_009905416.1 | PadR family transcriptional regulator | - |
| JMW49_RS01860 (JMW49_01860) | - | 410974..412095 (+) | 1122 | WP_003419591.1 | MGDG synthase family glycosyltransferase | - |
| JMW49_RS01865 (JMW49_01865) | - | 412223..414121 (-) | 1899 | WP_003419583.1 | glutamine synthetase | - |
| JMW49_RS01870 (JMW49_01870) | - | 414436..415212 (+) | 777 | WP_003419578.1 | 3'-5' exonuclease | - |
| JMW49_RS01875 (JMW49_01875) | - | 415304..416056 (-) | 753 | WP_003419575.1 | exodeoxyribonuclease III | - |
| JMW49_RS01880 (JMW49_01880) | galT | 416177..417127 (-) | 951 | WP_003419573.1 | galactose-1-phosphate uridylyltransferase | - |
| JMW49_RS01885 (JMW49_01885) | - | 417512..418708 (+) | 1197 | WP_003419570.1 | pyridoxal phosphate-dependent aminotransferase | - |
| JMW49_RS01890 (JMW49_01890) | - | 418927..419379 (-) | 453 | WP_003419561.1 | MarR family winged helix-turn-helix transcriptional regulator | - |
| JMW49_RS01895 (JMW49_01895) | purB | 419680..421125 (-) | 1446 | WP_003419557.1 | adenylosuccinate lyase | - |
| JMW49_RS01900 (JMW49_01900) | - | 421264..422175 (-) | 912 | WP_022615208.1 | tyrosine-type recombinase/integrase | - |
| JMW49_RS01905 (JMW49_01905) | - | 422432..423256 (+) | 825 | WP_009905410.1 | undecaprenyl-diphosphate phosphatase | - |
| JMW49_RS01910 (JMW49_01910) | lepB | 423296..423826 (+) | 531 | WP_009905409.1 | signal peptidase I | - |
| JMW49_RS01915 (JMW49_01915) | - | 423906..425687 (-) | 1782 | WP_003419546.1 | UvrD-helicase domain-containing protein | - |
| JMW49_RS01920 (JMW49_01920) | tnpB | 426019..427137 (-) | 1119 | WP_041160402.1 | IS200/IS605 family element RNA-guided endonuclease TnpB | - |
| JMW49_RS01925 (JMW49_01925) | - | 427139..427237 (-) | 99 | Protein_387 | transposase | - |
| JMW49_RS01930 (JMW49_01930) | - | 428043..430379 (-) | 2337 | WP_003419542.1 | diguanylate cyclase | - |
| JMW49_RS01935 (JMW49_01935) | rny | 430689..432230 (-) | 1542 | WP_003428216.1 | ribonuclease Y | - |
| JMW49_RS01940 (JMW49_01940) | recA | 432406..433452 (-) | 1047 | WP_003419530.1 | recombinase RecA | Machinery gene |
| JMW49_RS01945 (JMW49_01945) | pgsA | 433719..434261 (-) | 543 | WP_009905407.1 | CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase | - |
| JMW49_RS01950 (JMW49_01950) | rimO | 434248..435582 (-) | 1335 | WP_003419527.1 | 30S ribosomal protein S12 methylthiotransferase RimO | - |
| JMW49_RS01955 (JMW49_01955) | mnmH | 435576..436634 (-) | 1059 | WP_003419524.1 | tRNA 2-selenouridine(34) synthase MnmH | - |
| JMW49_RS01960 (JMW49_01960) | - | 436637..439045 (-) | 2409 | WP_003419521.1 | FtsK/SpoIIIE family DNA translocase | - |
| JMW49_RS01965 (JMW49_01965) | - | 439168..439902 (-) | 735 | WP_009905406.1 | ClpP family protease | - |
| JMW49_RS01970 (JMW49_01970) | dapG | 440016..441239 (-) | 1224 | WP_003419506.1 | aspartate kinase | - |
| JMW49_RS01975 (JMW49_01975) | - | 441249..441494 (-) | 246 | WP_003419503.1 | YlmC/YmxH family sporulation protein | - |
| JMW49_RS01980 (JMW49_01980) | - | 441529..442776 (-) | 1248 | WP_003419500.1 | M16 family metallopeptidase | - |
| JMW49_RS01985 (JMW49_01985) | - | 442934..443677 (-) | 744 | WP_003419498.1 | polysaccharide deacetylase family protein | - |
| JMW49_RS01990 (JMW49_01990) | pnp | 443800..445911 (-) | 2112 | WP_003419494.1 | polyribonucleotide nucleotidyltransferase | - |
| JMW49_RS01995 (JMW49_01995) | - | 446036..446881 (-) | 846 | WP_003419493.1 | DegV family protein | - |
| JMW49_RS02000 (JMW49_02000) | rpsO | 447121..447378 (-) | 258 | WP_003419491.1 | 30S ribosomal protein S15 | - |
| JMW49_RS02005 (JMW49_02005) | - | 447482..448411 (-) | 930 | WP_003419488.1 | bifunctional riboflavin kinase/FAD synthetase | - |
| JMW49_RS02010 (JMW49_02010) | truB | 448541..449446 (-) | 906 | WP_003419486.1 | tRNA pseudouridine(55) synthase TruB | - |
| JMW49_RS02015 (JMW49_02015) | - | 449459..450442 (-) | 984 | WP_003419484.1 | DHH family phosphoesterase | - |
| JMW49_RS02020 (JMW49_02020) | rbfA | 450423..450803 (-) | 381 | WP_003419483.1 | 30S ribosome-binding factor RbfA | - |
| JMW49_RS02025 (JMW49_02025) | infB | 450846..452786 (-) | 1941 | WP_003419480.1 | translation initiation factor IF-2 | - |
| JMW49_RS02030 (JMW49_02030) | - | 452808..453119 (-) | 312 | WP_003419470.1 | L7Ae/L30e/S12e/Gadd45 family ribosomal protein | - |
| JMW49_RS02035 (JMW49_02035) | rnpM | 453109..453390 (-) | 282 | WP_003419469.1 | RNase P modulator RnpM | - |
| JMW49_RS02040 (JMW49_02040) | nusA | 453397..454551 (-) | 1155 | WP_003419468.1 | transcription termination factor NusA | - |
| JMW49_RS02045 (JMW49_02045) | rimP | 454581..455042 (-) | 462 | WP_003419467.1 | ribosome maturation factor RimP | - |
Sequence
Protein
Download Length: 348 a.a. Molecular weight: 37387.68 Da Isoelectric Point: 4.8236
>NTDB_id=529396 JMW49_RS01940 WP_003419530.1 432406..433452(-) (recA) [Clostridioides difficile strain CD9301]
MSVDQEKLKALNEALGKIEKDFGKGSVMKLGEATSMSIDVISTGAIGLDIAIGIGGLPRGRIVEVYGPESSGKTTVALSC
VASAQKDGGIAAFIDAEHALDPVYAKALGVDVDNLIISQPDTGEQALEIAEALIRSGAIDIIVIDSVAALVPKAEIDGDM
GDSHVGLQARLMSQALRKLTGSIKKSNCVAIFINQLREKVGIMFGNPETTTGGRALKFYSSVRLDVRKIDTIKQGDKVIG
SRTRVKVVKNKVAPPFKQAEFDIMYGEGISKIGDLLDIAADVDIVKKSGSWYSYNDTKLGQGRENVKKFLEDNLDLTNEI
DEKVRAFYNLNEEHEEAGNSVSKEIVEE
MSVDQEKLKALNEALGKIEKDFGKGSVMKLGEATSMSIDVISTGAIGLDIAIGIGGLPRGRIVEVYGPESSGKTTVALSC
VASAQKDGGIAAFIDAEHALDPVYAKALGVDVDNLIISQPDTGEQALEIAEALIRSGAIDIIVIDSVAALVPKAEIDGDM
GDSHVGLQARLMSQALRKLTGSIKKSNCVAIFINQLREKVGIMFGNPETTTGGRALKFYSSVRLDVRKIDTIKQGDKVIG
SRTRVKVVKNKVAPPFKQAEFDIMYGEGISKIGDLLDIAADVDIVKKSGSWYSYNDTKLGQGRENVKKFLEDNLDLTNEI
DEKVRAFYNLNEEHEEAGNSVSKEIVEE
Nucleotide
Download Length: 1047 bp
>NTDB_id=529396 JMW49_RS01940 WP_003419530.1 432406..433452(-) (recA) [Clostridioides difficile strain CD9301]
ATGAGTGTAGATCAAGAAAAATTAAAAGCGTTGAATGAAGCTTTAGGTAAAATTGAAAAAGATTTTGGTAAAGGTTCAGT
AATGAAATTGGGAGAAGCAACATCTATGTCTATAGATGTTATATCAACAGGAGCGATTGGTTTAGATATAGCTATTGGTA
TAGGAGGTCTACCTAGAGGGAGAATAGTTGAAGTATATGGTCCAGAATCTTCTGGTAAGACTACTGTTGCACTTAGTTGT
GTAGCATCAGCTCAAAAAGATGGAGGAATAGCTGCATTTATAGATGCAGAACATGCACTTGACCCAGTATACGCAAAAGC
TTTGGGCGTGGATGTTGATAACCTAATAATATCTCAACCAGATACAGGTGAACAGGCTTTAGAGATAGCAGAGGCATTGA
TAAGAAGTGGAGCGATAGATATAATAGTAATAGACTCAGTAGCAGCATTAGTTCCAAAGGCTGAAATAGATGGAGATATG
GGTGACTCTCACGTAGGGTTACAAGCTAGACTTATGTCGCAAGCTCTTAGAAAGTTAACTGGTTCAATTAAAAAATCAAA
TTGTGTTGCTATATTTATAAACCAGTTAAGAGAGAAAGTAGGAATAATGTTTGGAAACCCAGAAACTACTACTGGAGGAC
GTGCATTAAAATTCTATTCATCAGTTAGATTGGATGTTAGAAAAATAGACACAATAAAACAAGGAGATAAAGTTATAGGT
AGTAGAACTAGAGTTAAAGTCGTTAAAAATAAAGTAGCACCTCCATTTAAGCAAGCTGAATTTGATATAATGTATGGAGA
AGGGATTTCAAAAATTGGAGACCTTCTAGATATAGCTGCTGATGTAGATATAGTAAAAAAATCAGGTTCATGGTATAGTT
ACAATGATACTAAACTTGGACAAGGAAGAGAAAATGTTAAAAAATTCTTGGAGGATAATTTAGATTTAACTAATGAAATA
GATGAGAAAGTTAGAGCATTTTACAATTTAAATGAAGAACATGAAGAAGCAGGTAATTCAGTATCAAAAGAAATTGTAGA
AGAATAA
ATGAGTGTAGATCAAGAAAAATTAAAAGCGTTGAATGAAGCTTTAGGTAAAATTGAAAAAGATTTTGGTAAAGGTTCAGT
AATGAAATTGGGAGAAGCAACATCTATGTCTATAGATGTTATATCAACAGGAGCGATTGGTTTAGATATAGCTATTGGTA
TAGGAGGTCTACCTAGAGGGAGAATAGTTGAAGTATATGGTCCAGAATCTTCTGGTAAGACTACTGTTGCACTTAGTTGT
GTAGCATCAGCTCAAAAAGATGGAGGAATAGCTGCATTTATAGATGCAGAACATGCACTTGACCCAGTATACGCAAAAGC
TTTGGGCGTGGATGTTGATAACCTAATAATATCTCAACCAGATACAGGTGAACAGGCTTTAGAGATAGCAGAGGCATTGA
TAAGAAGTGGAGCGATAGATATAATAGTAATAGACTCAGTAGCAGCATTAGTTCCAAAGGCTGAAATAGATGGAGATATG
GGTGACTCTCACGTAGGGTTACAAGCTAGACTTATGTCGCAAGCTCTTAGAAAGTTAACTGGTTCAATTAAAAAATCAAA
TTGTGTTGCTATATTTATAAACCAGTTAAGAGAGAAAGTAGGAATAATGTTTGGAAACCCAGAAACTACTACTGGAGGAC
GTGCATTAAAATTCTATTCATCAGTTAGATTGGATGTTAGAAAAATAGACACAATAAAACAAGGAGATAAAGTTATAGGT
AGTAGAACTAGAGTTAAAGTCGTTAAAAATAAAGTAGCACCTCCATTTAAGCAAGCTGAATTTGATATAATGTATGGAGA
AGGGATTTCAAAAATTGGAGACCTTCTAGATATAGCTGCTGATGTAGATATAGTAAAAAAATCAGGTTCATGGTATAGTT
ACAATGATACTAAACTTGGACAAGGAAGAGAAAATGTTAAAAAATTCTTGGAGGATAATTTAGATTTAACTAATGAAATA
GATGAGAAAGTTAGAGCATTTTACAATTTAAATGAAGAACATGAAGAAGCAGGTAATTCAGTATCAAAAGAAATTGTAGA
AGAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.