Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   JMW46_RS02560 Genome accession   NZ_CP068553
Coordinates   560915..562747 (-) Length   610 a.a.
NCBI ID   WP_003423384.1    Uniprot ID   A0AAX3H2C3
Organism   Clostridioides difficile strain 2016     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 555915..567747
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JMW46_RS02540 (JMW46_02540) - 555926..557290 (-) 1365 WP_003423391.1 aldehyde dehydrogenase -
  JMW46_RS02545 (JMW46_02545) - 557606..558130 (-) 525 WP_003423389.1 flavodoxin domain-containing protein -
  JMW46_RS02550 (JMW46_02550) - 558179..558658 (-) 480 WP_231303716.1 MarR family winged helix-turn-helix transcriptional regulator -
  JMW46_RS02555 (JMW46_02555) hflX 558909..560180 (-) 1272 WP_009905810.1 GTPase HflX -
  JMW46_RS02560 (JMW46_02560) rcrQ 560915..562747 (-) 1833 WP_003423384.1 ABC transporter ATP-binding protein Regulator
  JMW46_RS02565 (JMW46_02565) - 562740..564986 (-) 2247 WP_003423382.1 ABC transporter ATP-binding protein -
  JMW46_RS02570 (JMW46_02570) - 565054..565515 (-) 462 WP_003423381.1 MarR family winged helix-turn-helix transcriptional regulator -
  JMW46_RS02575 (JMW46_02575) - 565820..566386 (-) 567 WP_003423380.1 beta-class carbonic anhydrase -
  JMW46_RS02580 (JMW46_02580) - 567073..567411 (+) 339 WP_003423377.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 610 a.a.        Molecular weight: 68076.91 Da        Isoelectric Point: 6.0551

>NTDB_id=529281 JMW46_RS02560 WP_003423384.1 560915..562747(-) (rcrQ) [Clostridioides difficile strain 2016]
MSRMGRGPMGKSMGAGQKANDFKGTMRKLIAYLSKFKISIILVIVFAIGSASFSIVGPKILGKATTKIFEGLVSKVSGGN
VGIDFNAIGKILMFLLCLYLISALFSFIQGFIMSGISQKVSYNLRKEISEKLDRLPMKYFDTKTHGEILSRITNDIDTLN
QSLNQSMTQLITSVTTMIGVLIMMLSISGIMTLVAILILPISMFVISRIVKKSQKYFRYQQEYLGNVNGQVEETYSGQTI
VKAFNREDEVIEEFDKLNDSLYNSAWKSQFLSGIMQPLMMFIGNLGYVMVSILGGWLAIKKTIEVGDIQSFIQYVRNFTQ
PMTQIAQVANLLQSTAAASERVFEFLEEEEEDQIVENAVSIDGLKGKIDFENVNFGYNPNKTIINDFSVNVKPGQKVAIV
GPTGAGKTTIVKLLMRFYDVNSGSILIDGHNIKDFNRSELREMFGMVLQDTWLFSGSIMENIRYGKLNATDEEVIEAAKS
AHVHRFIKTLPDGYNMKLNEEASNVSQGQKQLLTIARAILADPKILILDEATSSVDTRTEVLIQKAMDNLMEGRTSFVIA
HRLSTIRDADMILVMNEGDIVEQGNHEELLKKGGFYANLYNSQFEEDEAM

Nucleotide


Download         Length: 1833 bp        

>NTDB_id=529281 JMW46_RS02560 WP_003423384.1 560915..562747(-) (rcrQ) [Clostridioides difficile strain 2016]
ATGAGTAGAATGGGAAGAGGTCCTATGGGAAAATCTATGGGAGCAGGACAAAAAGCAAATGACTTTAAAGGGACTATGAG
AAAACTAATTGCATACTTATCTAAATTTAAAATATCAATAATTTTAGTAATTGTATTTGCTATTGGTAGTGCGTCGTTTT
CTATAGTAGGTCCAAAAATTTTAGGTAAGGCAACTACAAAGATATTTGAAGGATTAGTGAGTAAAGTTTCTGGAGGAAAT
GTAGGTATAGATTTTAATGCAATTGGAAAAATCTTAATGTTTTTACTTTGCCTTTATTTAATAAGTGCACTGTTCTCTTT
TATACAAGGATTTATAATGAGTGGAATTTCTCAAAAAGTATCCTATAATTTAAGAAAAGAGATTTCAGAAAAATTGGATA
GATTGCCAATGAAGTATTTTGATACTAAGACGCATGGTGAAATATTATCGAGAATTACGAATGATATAGATACTTTAAAT
CAAAGTTTAAATCAAAGTATGACACAGCTTATAACATCAGTAACAACTATGATAGGTGTTTTGATAATGATGTTATCTAT
AAGTGGAATTATGACATTGGTAGCAATTTTAATATTACCAATATCAATGTTTGTAATTTCAAGAATAGTAAAGAAATCAC
AAAAATACTTTAGATATCAACAAGAATATTTAGGAAATGTAAATGGTCAAGTTGAAGAAACTTATAGTGGTCAAACAATA
GTGAAAGCATTTAATCGTGAAGATGAGGTAATTGAAGAGTTTGATAAATTAAATGATAGCCTGTATAATTCAGCATGGAA
GTCTCAATTTTTATCAGGTATAATGCAACCACTTATGATGTTTATTGGAAACTTGGGATATGTAATGGTATCAATCTTAG
GAGGTTGGCTTGCAATTAAGAAAACAATTGAGGTTGGTGACATACAATCATTTATACAATATGTAAGAAACTTTACACAG
CCAATGACTCAGATTGCACAGGTTGCCAATTTATTGCAATCAACAGCAGCAGCTTCTGAAAGAGTATTTGAGTTTTTAGA
AGAGGAAGAAGAAGACCAAATTGTTGAAAATGCAGTTTCAATAGATGGTTTAAAAGGTAAAATTGATTTTGAAAATGTTA
ACTTTGGATATAACCCAAACAAGACTATAATAAATGATTTTTCAGTAAATGTTAAACCTGGTCAAAAAGTTGCTATTGTT
GGACCTACAGGAGCAGGTAAAACTACAATAGTTAAACTTTTAATGAGATTTTATGATGTTAATAGCGGTTCAATACTGAT
TGATGGACATAATATTAAAGATTTTAATCGTAGTGAGCTTAGAGAAATGTTTGGTATGGTTCTTCAAGATACATGGTTAT
TTAGTGGTTCAATTATGGAAAATATAAGATATGGTAAGTTGAATGCTACAGATGAAGAAGTTATAGAGGCTGCTAAATCT
GCACATGTTCATAGATTTATTAAGACATTACCAGATGGATATAATATGAAATTAAATGAAGAAGCAAGTAATGTTTCTCA
AGGTCAAAAACAATTATTGACTATAGCTCGTGCTATTTTAGCTGATCCTAAAATTTTAATATTAGATGAAGCTACAAGTT
CTGTTGATACTAGAACAGAAGTATTGATTCAAAAGGCTATGGATAATCTTATGGAAGGTAGAACAAGTTTTGTTATAGCC
CACAGATTATCAACTATACGTGATGCTGATATGATTCTTGTAATGAATGAAGGAGATATAGTTGAACAAGGAAATCATGA
GGAACTTCTAAAGAAAGGTGGATTTTATGCTAATCTTTACAATTCTCAATTTGAAGAAGATGAAGCAATGTAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(385-533)

ABC transporter transmembrane region (ABC_membrane)

(40-322)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

51.186

96.721

0.495