Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   K7G42_RS09195 Genome accession   NZ_CP082783
Coordinates   1727191..1727862 (-) Length   223 a.a.
NCBI ID   WP_037620820.1    Uniprot ID   -
Organism   Streptococcus parauberis strain KRS02083     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1722191..1732862
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K7G42_RS09185 (K7G42_09110) - 1725519..1726478 (+) 960 WP_071349337.1 IS30-like element IS1062 family transposase -
  K7G42_RS09190 (K7G42_09115) hpf 1726568..1727116 (-) 549 WP_003105371.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  K7G42_RS09195 (K7G42_09120) comFC/cflB 1727191..1727862 (-) 672 WP_037620820.1 ComF family protein Machinery gene
  K7G42_RS09200 (K7G42_09125) comFA/cflA 1727852..1729156 (-) 1305 WP_004234978.1 DEAD/DEAH box helicase Machinery gene
  K7G42_RS09205 (K7G42_09130) - 1729213..1729845 (+) 633 WP_004234979.1 YigZ family protein -
  K7G42_RS09210 (K7G42_09135) cysK 1729968..1730897 (+) 930 WP_003103108.1 cysteine synthase A -
  K7G42_RS09215 (K7G42_09140) - 1730973..1731326 (-) 354 WP_003103672.1 S1 RNA-binding domain-containing protein -
  K7G42_RS09220 (K7G42_09145) - 1731326..1732726 (-) 1401 WP_003104279.1 bifunctional Cof-type HAD-IIB family hydrolase/peptidylprolyl isomerase -

Sequence

Protein


Download         Length: 223 a.a.        Molecular weight: 25845.06 Da        Isoelectric Point: 8.7227

>NTDB_id=529255 K7G42_RS09195 WP_037620820.1 1727191..1727862(-) (comFC/cflB) [Streptococcus parauberis strain KRS02083]
MVNKCLICGENCRPRLSFTDICFMVNRQSQLCETCSGLFERIGRKHCPTCCKVGIELMCSDCKSWFENGVEVSHKALYKY
NLAMKDYFSKYKFQGDYLLKSIFSKELKIYIEKNYEGYTNLVVPISQSRMETRGFNQVSSILADVNIPYIDILRKCEGKK
QSEKTKHQRLESENQFSLLHIENLPKKILIIDDIYTTGTTISQIRKLLHQHGINDIKSVSIAR

Nucleotide


Download         Length: 672 bp        

>NTDB_id=529255 K7G42_RS09195 WP_037620820.1 1727191..1727862(-) (comFC/cflB) [Streptococcus parauberis strain KRS02083]
ATGGTGAATAAGTGTTTAATATGTGGAGAAAATTGTAGACCAAGATTATCATTTACGGATATCTGTTTTATGGTGAATCG
CCAAAGCCAACTGTGTGAAACATGTTCTGGCTTATTCGAAAGAATTGGTAGGAAACATTGCCCAACCTGTTGCAAAGTTG
GTATAGAATTAATGTGTAGTGACTGTAAATCATGGTTTGAAAATGGGGTAGAAGTATCACACAAAGCACTATATAAGTAT
AATTTAGCAATGAAAGATTATTTTTCTAAATACAAGTTTCAAGGTGACTATTTATTAAAAAGTATATTTTCTAAAGAATT
AAAAATATACATTGAAAAGAATTATGAAGGTTATACAAATCTGGTTGTACCAATTAGCCAGAGTAGAATGGAAACGCGTG
GGTTTAATCAAGTATCCTCAATTCTTGCAGACGTCAATATTCCTTATATAGATATCTTACGAAAATGTGAAGGAAAAAAG
CAGTCTGAGAAAACCAAACATCAAAGGCTAGAATCTGAGAATCAATTTTCACTTCTTCATATAGAAAATCTTCCAAAAAA
AATACTAATTATTGATGATATTTATACGACGGGGACAACAATTTCACAAATCAGAAAGTTGTTACATCAGCATGGTATAA
ATGATATAAAAAGTGTATCGATAGCAAGGTAA

Domains

Predicted by InterProScan.

Phosphoribosyl transferase domain (Pribosyltran)

(135-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus mitis NCTC 12261

44.545

98.655

0.439
  comFC/cflB Streptococcus pneumoniae TIGR4

43.636

98.655

0.43
  comFC/cflB Streptococcus pneumoniae Rx1

43.182

98.655

0.426
  comFC/cflB Streptococcus pneumoniae D39

43.182

98.655

0.426
  comFC/cflB Streptococcus pneumoniae R6

43.182

98.655

0.426
  comFC/cflB Streptococcus mitis SK321

42.727

98.655

0.422