Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   BAJP3144_RS18455 Genome accession   NZ_CP082283
Coordinates   3737177..3738307 (-) Length   376 a.a.
NCBI ID   WP_017418744.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain JP3144     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 3732177..3743307
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BAJP3144_RS18425 (BAJP3144_18425) - 3733019..3733423 (-) 405 WP_222893441.1 Rrf2 family transcriptional regulator -
  BAJP3144_RS18430 (BAJP3144_18430) ureC 3733565..3735274 (-) 1710 WP_007407580.1 urease subunit alpha -
  BAJP3144_RS18435 (BAJP3144_18435) ureB 3735271..3735645 (-) 375 WP_029972864.1 urease subunit beta -
  BAJP3144_RS18440 (BAJP3144_18440) ureA 3735642..3735959 (-) 318 WP_003151198.1 urease subunit gamma -
  BAJP3144_RS18445 (BAJP3144_18445) - 3736313..3736501 (-) 189 WP_026092293.1 CsbD family protein -
  BAJP3144_RS18450 (BAJP3144_18450) - 3736576..3737055 (-) 480 WP_007407583.1 hypothetical protein -
  BAJP3144_RS18455 (BAJP3144_18455) rapC 3737177..3738307 (-) 1131 WP_017418744.1 tetratricopeptide repeat protein Regulator
  BAJP3144_RS18460 (BAJP3144_18460) moaA 3738498..3739523 (-) 1026 WP_014419094.1 GTP 3',8-cyclase MoaA -
  BAJP3144_RS18465 (BAJP3144_18465) fdhD 3739541..3740329 (-) 789 WP_191389293.1 formate dehydrogenase accessory sulfurtransferase FdhD -
  BAJP3144_RS18470 (BAJP3144_18470) - 3740424..3740588 (-) 165 WP_007407587.1 hypothetical protein -
  BAJP3144_RS18475 (BAJP3144_18475) - 3740674..3741354 (-) 681 WP_191389295.1 VWA domain-containing protein -
  BAJP3144_RS18480 (BAJP3144_18480) - 3741664..3742350 (-) 687 WP_007407590.1 VWA domain-containing protein -

Sequence

Protein


Download         Length: 376 a.a.        Molecular weight: 44861.96 Da        Isoelectric Point: 5.4375

>NTDB_id=528096 BAJP3144_RS18455 WP_017418744.1 3737177..3738307(-) (rapC) [Bacillus amyloliquefaciens strain JP3144]
MTAYEIPSSQVGVKINKWYKHILAFQAADAIKLKEEIDEDIQRMEEDQLLLLYYQLISYRHHIMLDYVKPECTEQSQIQY
SELQKTIESTDSISGLSEYYFHLFRGMYEFDHNNYVAAISFYRKAEKLLSFVEDDIERAEFHFKMSEVFYVMKQTHFSMN
HGIQALDTYMKHDFYRVRRIQCHFVISGNYIDCKNYDKALEHLDEALRLSLLEGQPRLIGSSLYNLGNCYSEKRDLDEAA
RYFRKAVPVFEEHQLEQLPKALFSLTHTLFRLHDDQAALTYYERGVMIAKERGDRFSLEKYKFLQALYLESLNMDLIHEV
FDYMNEKSLYVYIEDFALEAAIYTSGHGQYKEAAYFYEKAIRMRENIQKEQCLYDI

Nucleotide


Download         Length: 1131 bp        

>NTDB_id=528096 BAJP3144_RS18455 WP_017418744.1 3737177..3738307(-) (rapC) [Bacillus amyloliquefaciens strain JP3144]
ATGACCGCATACGAGATTCCGTCATCTCAAGTTGGAGTTAAGATCAACAAATGGTACAAGCACATTTTAGCCTTTCAAGC
GGCTGATGCCATAAAGCTGAAAGAGGAAATTGATGAGGATATACAACGTATGGAGGAAGACCAGCTGCTGCTGTTATATT
ATCAGCTGATCAGCTACCGCCATCATATTATGCTTGATTACGTCAAGCCGGAATGCACCGAACAATCACAGATTCAGTAC
AGCGAGCTGCAAAAGACGATCGAAAGCACGGACAGCATATCGGGACTGTCTGAGTATTATTTCCATTTGTTCAGAGGGAT
GTATGAATTCGATCACAATAACTATGTTGCGGCTATTTCTTTTTACCGGAAAGCGGAAAAACTCCTTTCATTTGTCGAGG
ATGATATAGAGAGGGCGGAATTCCATTTCAAGATGTCTGAAGTGTTTTATGTCATGAAGCAGACTCATTTTTCCATGAAT
CACGGGATTCAGGCGCTGGATACGTATATGAAACACGATTTCTACAGAGTGCGGAGAATTCAATGCCATTTCGTCATCTC
AGGAAACTACATCGACTGCAAAAACTACGACAAAGCGCTTGAGCATTTAGACGAAGCCCTCCGCCTTTCTTTGCTTGAAG
GACAGCCCCGCCTGATCGGGTCTTCGCTTTACAATCTGGGGAATTGTTATTCTGAAAAGCGCGATCTGGATGAAGCGGCC
CGGTACTTTAGAAAAGCGGTTCCCGTTTTTGAAGAGCATCAGCTTGAACAGCTTCCGAAGGCACTGTTCAGCTTAACGCA
CACCCTTTTCAGGCTGCATGATGACCAAGCGGCCCTTACCTATTATGAAAGAGGGGTCATGATCGCGAAAGAACGGGGCG
ACCGATTCAGTTTAGAGAAGTATAAGTTTTTACAAGCGCTTTATTTGGAGTCACTCAATATGGATTTAATCCATGAAGTG
TTTGACTATATGAATGAAAAATCGCTGTATGTGTATATTGAAGATTTCGCCTTGGAGGCCGCCATTTACACAAGCGGACA
TGGGCAATATAAAGAAGCGGCGTATTTTTATGAAAAAGCGATTCGCATGAGAGAAAACATTCAAAAAGAACAGTGTTTAT
ACGATATATAA

Domains

Predicted by InterProScan.

Tetratricopeptide repeat (TPR_12)

(192-251)

response regulator aspartate phosphatase H, N terminal (RapH_N)

(6-66)

Anaphase-promoting complex subunit 5 (ANAPC5)

(314-373)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

41.842

100

0.423
  rapF Bacillus subtilis subsp. subtilis str. 168

40

99.734

0.399