Detailed information    

insolico Bioinformatically predicted

Overview


Name   pptB   Type   Regulator
Locus tag   K6973_RS09065 Genome accession   NZ_CP082206
Coordinates   1813855..1814889 (-) Length   344 a.a.
NCBI ID   WP_222819273.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae strain DY107     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context


Location: 1808855..1819889
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6973_RS09030 (K6973_09030) - 1809478..1809780 (-) 303 WP_003052320.1 YlxQ-related RNA-binding protein -
  K6973_RS09035 (K6973_09035) - 1809773..1810069 (-) 297 WP_003057040.1 YlxR family protein -
  K6973_RS09040 (K6973_09040) nusA 1810085..1811242 (-) 1158 WP_003052330.1 transcription termination factor NusA -
  K6973_RS09045 (K6973_09045) rimP 1811385..1811879 (-) 495 WP_044022604.1 ribosome maturation factor RimP -
  K6973_RS09055 (K6973_09055) trmB 1812364..1812999 (-) 636 WP_003052470.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  K6973_RS09060 (K6973_09060) - 1812999..1813790 (-) 792 WP_003052472.1 phosphotransferase family protein -
  K6973_RS09065 (K6973_09065) pptB 1813855..1814889 (-) 1035 WP_222819273.1 ABC transporter permease Regulator
  K6973_RS09070 (K6973_09070) pptA 1814892..1815617 (-) 726 WP_218654770.1 ABC transporter ATP-binding protein Regulator
  K6973_RS09075 (K6973_09075) - 1815689..1816108 (+) 420 WP_012767493.1 HIT family protein -
  K6973_RS09080 (K6973_09080) - 1816105..1816425 (+) 321 WP_138126343.1 chemotaxis protein -
  K6973_RS09085 (K6973_09085) - 1816587..1817855 (-) 1269 WP_138126345.1 LCP family protein -
  K6973_RS09090 (K6973_09090) - 1817867..1818388 (-) 522 WP_218654771.1 N-acetyltransferase -
  K6973_RS09095 (K6973_09095) tsaE 1818381..1818824 (-) 444 WP_115247110.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -

Sequence


Protein


Download         Length: 344 a.a.        Molecular weight: 40321.54 Da        Isoelectric Point: 10.2651

>NTDB_id=527484 K6973_RS09065 WP_222819273.1 1813855..1814889(-) (pptB) [Streptococcus dysgalactiae strain DY107]
MKALFLKRRQDFQKQQSKYLRYVFNDHFVLVLMFLFGFCLVQYSQLLKHFPSNHWPIWLFLMVGMLLLLHLGSVATYLEE
PDHHFLLPKEEAVVAHIKQAERSALVIWGCLQTAILIFLYPIFNRLGFSLFTFALLLLGLLALKRLLLGYKVRQFLKKDG
LDWEKAIAFESNRKQAILKFYSLFTNVKGISTKVKKRSYLNPLLKLVKENSKHLWLTLYLKAFLRSSDYLGLFLRLLLLS
SLALLFISNAYLSVALALVFNYLILFQLLSLYHHYDYHYMTSLYPENHQGKRANLLTFLRGLSYLILVINLLLCHSLEKA
LILVVVMGVITLFYLPYKLKKIID

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=527484 K6973_RS09065 WP_222819273.1 1813855..1814889(-) (pptB) [Streptococcus dysgalactiae strain DY107]
ATGAAAGCATTATTTCTGAAACGCCGTCAAGACTTTCAAAAACAACAAAGCAAATACCTGCGCTATGTCTTTAATGACCA
TTTTGTCTTGGTCCTGATGTTTTTGTTTGGTTTTTGCTTGGTGCAATACAGCCAGTTATTGAAGCATTTTCCTAGTAACC
ATTGGCCTATATGGCTCTTTCTAATGGTGGGGATGCTGTTATTGCTTCACTTGGGCTCGGTGGCAACTTATTTAGAAGAG
CCTGATCACCATTTTCTACTTCCGAAAGAAGAAGCTGTGGTTGCTCATATTAAACAAGCTGAGCGCTCTGCTCTTGTGAT
TTGGGGCTGTTTACAGACAGCTATCCTCATCTTTTTATATCCGATCTTCAATCGCCTAGGCTTCTCCCTATTTACTTTTG
CTCTTTTGCTTTTGGGATTACTAGCTCTTAAACGACTCCTTTTGGGGTATAAAGTAAGACAATTTTTAAAGAAAGATGGA
CTGGATTGGGAAAAAGCCATTGCTTTTGAGAGTAATCGTAAACAGGCTATCTTAAAGTTTTATTCTCTTTTCACAAATGT
TAAGGGAATTTCCACAAAGGTTAAGAAAAGATCTTATTTAAATCCTCTTCTAAAATTGGTAAAAGAAAATAGTAAGCACC
TCTGGCTAACGCTCTATTTAAAAGCTTTTTTACGAAGTTCAGACTATTTAGGACTCTTTTTACGCTTATTATTATTGAGT
TCCCTAGCCTTGCTGTTTATTTCTAACGCTTACCTATCAGTGGCTTTAGCCTTGGTCTTTAATTATTTGATTCTTTTTCA
ATTGTTGTCTCTTTACCACCATTACGATTACCACTACATGACTAGTCTTTATCCAGAGAATCATCAAGGGAAGCGGGCGA
ACCTATTGACTTTTTTGAGAGGATTAAGTTATCTGATATTAGTTATCAACCTCCTGCTCTGCCATTCTTTAGAAAAAGCC
CTTATTTTAGTAGTGGTCATGGGAGTCATTACACTTTTCTACCTTCCTTATAAGTTGAAGAAGATAATTGACTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptB Streptococcus thermophilus LMD-9

46.802

100

0.468

  pptB Streptococcus salivarius strain HSISS4

46.512

100

0.465