Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   I6I96_RS02685 Genome accession   NZ_CP068090
Coordinates   521465..522094 (+) Length   209 a.a.
NCBI ID   WP_000839131.1    Uniprot ID   -
Organism   Shigella boydii strain FDAARGOS_1139     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
ICE 501111..531293 521465..522094 within 0


Gene organization within MGE regions


Location: 501111..531293
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6I96_RS23160 - 501771..501881 (-) 111 Protein_518 hypothetical protein -
  I6I96_RS02600 (I6I96_02600) - 502174..503429 (-) 1256 Protein_519 YccE family protein -
  I6I96_RS02605 (I6I96_02605) - 503504..504201 (+) 698 WP_094106546.1 IS1 family transposase -
  I6I96_RS02610 (I6I96_02610) - 504247..504984 (+) 738 WP_162761947.1 fimbrial chaperone -
  I6I96_RS02615 (I6I96_02615) pyrD 505095..506105 (+) 1011 WP_001295352.1 quinone-dependent dihydroorotate dehydrogenase -
  I6I96_RS02620 (I6I96_02620) zapC 506279..506821 (+) 543 WP_004985081.1 cell division protein ZapC -
  I6I96_RS02625 (I6I96_02625) ycbX 506818..507927 (-) 1110 WP_000224267.1 6-N-hydroxylaminopurine resistance protein YcbX -
  I6I96_RS02630 (I6I96_02630) rlmKL 508171..510279 (+) 2109 WP_039061596.1 bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL -
  I6I96_RS02635 (I6I96_02635) - 510291..512198 (+) 1908 WP_000053096.1 ABC transporter ATP-binding protein -
  I6I96_RS02640 (I6I96_02640) pqiA 512328..513581 (+) 1254 WP_000333176.1 membrane integrity-associated transporter subunit PqiA -
  I6I96_RS02645 (I6I96_02645) pqiB 513586..515226 (+) 1641 WP_000445545.1 intermembrane transport protein PqiB -
  I6I96_RS02650 (I6I96_02650) pqiC 515223..515786 (+) 564 WP_000759124.1 membrane integrity-associated transporter subunit PqiC -
  I6I96_RS02655 (I6I96_02655) rmf 516042..516209 (+) 168 WP_000828648.1 ribosome modulation factor -
  I6I96_RS02660 (I6I96_02660) fabA 516279..516797 (-) 519 WP_000227927.1 bifunctional 3-hydroxydecanoyl-ACP dehydratase/trans-2-decenoyl-ACP isomerase -
  I6I96_RS02665 (I6I96_02665) - 516866..518626 (-) 1761 WP_000156488.1 Lon protease family protein -
  I6I96_RS02670 (I6I96_02670) matP 518812..519264 (+) 453 WP_000877160.1 macrodomain Ter protein MatP -
  I6I96_RS02675 (I6I96_02675) ompA 519340..520380 (-) 1041 WP_000750416.1 porin OmpA -
  I6I96_RS02680 (I6I96_02680) sulA 520737..521246 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  I6I96_RS02685 (I6I96_02685) sxy/tfoX 521465..522094 (+) 630 WP_000839131.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  I6I96_RS02690 (I6I96_02690) yccS 522057..524219 (-) 2163 WP_000875021.1 YccS family putative transporter -
  I6I96_RS02695 (I6I96_02695) - 524229..524675 (-) 447 WP_001261235.1 YccF domain-containing protein -
  I6I96_RS02700 (I6I96_02700) helD 524798..526852 (+) 2055 WP_000420537.1 DNA helicase IV -
  I6I96_RS02705 (I6I96_02705) mgsA 526884..527342 (-) 459 WP_000424181.1 methylglyoxal synthase -
  I6I96_RS02710 (I6I96_02710) - 527438..528100 (-) 663 WP_000847791.1 DUF2057 family protein -
  I6I96_RS02715 (I6I96_02715) - 528273..528686 (+) 414 WP_000665217.1 CoA-binding protein -
  I6I96_RS02720 (I6I96_02720) hspQ 528731..529048 (-) 318 WP_001295356.1 heat shock protein HspQ -
  I6I96_RS02725 (I6I96_02725) rlmI 529106..530296 (-) 1191 WP_000116300.1 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24177.10 Da        Isoelectric Point: 9.2180

>NTDB_id=527031 I6I96_RS02685 WP_000839131.1 521465..522094(+) (sxy/tfoX) [Shigella boydii strain FDAARGOS_1139]
MKSLSYKRIYKSQEYLAMLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=527031 I6I96_RS02685 WP_000839131.1 521465..522094(+) (sxy/tfoX) [Shigella boydii strain FDAARGOS_1139]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAATGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTTAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCACTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.522

100

0.995