Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGB   Type   Machinery gene
Locus tag   I6J04_RS12590 Genome accession   NZ_CP068079
Coordinates   2545911..2546576 (+) Length   221 a.a.
NCBI ID   WP_052719424.1    Uniprot ID   -
Organism   Staphylococcus carnosus strain FDAARGOS_1147     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2540911..2551576
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6J04_RS12570 (I6J04_12570) - 2541215..2542840 (-) 1626 WP_152648948.1 hypothetical protein -
  I6J04_RS12575 (I6J04_12575) - 2542894..2543586 (-) 693 WP_046099275.1 hypothetical protein -
  I6J04_RS12580 (I6J04_12580) - 2543570..2544748 (-) 1179 WP_046099276.1 tyrosine-type recombinase/integrase -
  I6J04_RS12585 (I6J04_12585) - 2544980..2545530 (+) 551 Protein_2469 ATPase, T2SS/T4P/T4SS family -
  I6J04_RS12590 (I6J04_12590) comGB 2545911..2546576 (+) 666 WP_052719424.1 type II secretion system F family protein Machinery gene
  I6J04_RS12595 (I6J04_12595) comGC 2546594..2546920 (+) 327 WP_015900413.1 competence type IV pilus major pilin ComGC Machinery gene
  I6J04_RS12600 (I6J04_12600) - 2546940..2547353 (+) 414 WP_231635362.1 prepilin-type cleavage/methylation domain-containing protein -
  I6J04_RS12605 (I6J04_12605) - 2547334..2547630 (+) 297 WP_046099277.1 hypothetical protein -
  I6J04_RS12610 (I6J04_12610) - 2547656..2547904 (+) 249 WP_235318552.1 hypothetical protein -
  I6J04_RS13845 (I6J04_12615) - 2547927..2548046 (+) 120 WP_414075505.1 hypothetical protein -
  I6J04_RS12620 (I6J04_12620) - 2548217..2548756 (+) 540 WP_046099279.1 shikimate kinase -
  I6J04_RS12625 (I6J04_12625) gcvT 2548947..2550041 (+) 1095 WP_046099280.1 glycine cleavage system aminomethyltransferase GcvT -
  I6J04_RS12630 (I6J04_12630) gcvPA 2550062..2551408 (+) 1347 WP_046099281.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 25968.12 Da        Isoelectric Point: 7.1287

>NTDB_id=526989 I6J04_RS12590 WP_052719424.1 2545911..2546576(+) (comGB) [Staphylococcus carnosus strain FDAARGOS_1147]
MLFGINHFILPEFQQIYTTMDIQLSPTLKFLNDFIQHFPQIILISFTICSLFLIIIYAIYYKLSISQRLKFILKVPMINT
YFNLFKTYQIANEFSLFFQNGIMLQQISKIYINQSVDPFLKYIGEFTIQNIENGLSLPEIFKKIGCFQNELIQFIEQGEK
SGNLEIELNIYAQILLSQIEAKMNKQIKLIQPIIFLLLGLLIVSLYLIIMLPMFDMMQSIK

Nucleotide


Download         Length: 666 bp        

>NTDB_id=526989 I6J04_RS12590 WP_052719424.1 2545911..2546576(+) (comGB) [Staphylococcus carnosus strain FDAARGOS_1147]
ATGTTATTCGGTATTAATCATTTTATACTCCCCGAATTCCAACAAATTTATACCACAATGGATATTCAACTTTCTCCTAC
CTTAAAATTTTTAAATGATTTTATTCAGCACTTTCCACAAATCATTTTAATATCATTTACTATTTGCTCTTTGTTTTTAA
TAATTATATATGCAATTTACTACAAACTTTCAATAAGCCAGAGACTAAAATTCATATTAAAAGTACCTATGATAAATACG
TATTTCAATTTATTCAAGACATATCAAATTGCTAATGAATTTTCATTGTTTTTTCAAAATGGTATTATGCTACAGCAAAT
TTCAAAAATTTATATCAATCAAAGTGTTGATCCTTTTCTTAAATATATAGGTGAATTCACAATTCAAAATATAGAAAATG
GATTGAGTCTGCCAGAAATTTTTAAAAAGATAGGCTGTTTTCAAAACGAGCTTATTCAATTCATTGAGCAAGGTGAAAAA
AGCGGAAACCTTGAAATAGAACTAAATATTTATGCCCAGATTTTATTAAGTCAAATTGAAGCTAAAATGAATAAACAAAT
CAAGTTAATTCAACCAATAATATTTTTATTATTAGGATTGCTTATTGTTTCCCTTTATCTAATTATTATGTTGCCTATGT
TCGATATGATGCAATCCATTAAATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(92-212)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGB Staphylococcus aureus MW2

49.774

100

0.498
  comGB Staphylococcus aureus N315

49.774

100

0.498