Detailed information    

insolico Bioinformatically predicted

Overview

Name   recS   Type   Machinery gene
Locus tag   U471_RS10520 Genome accession   NC_022653
Coordinates   2209362..2210852 (-) Length   496 a.a.
NCBI ID   WP_012117879.1    Uniprot ID   A7Z652
Organism   Bacillus amyloliquefaciens CC178     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2204362..2215852
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U471_RS10490 (U471_21810) gudB 2204451..2205725 (-) 1275 WP_003153413.1 NAD-specific glutamate dehydrogenase -
  U471_RS10495 (U471_21820) - 2205886..2206470 (-) 585 WP_012117875.1 genetic competence negative regulator -
  U471_RS10500 (U471_21830) - 2206622..2207410 (-) 789 WP_012117876.1 metallophosphoesterase -
  U471_RS10505 (U471_21840) - 2207497..2207955 (-) 459 WP_012117877.1 YpbF family protein -
  U471_RS10510 (U471_21850) - 2208024..2208782 (-) 759 WP_012117878.1 LysM peptidoglycan-binding domain-containing protein -
  U471_RS10515 (U471_21860) - 2208760..2209347 (-) 588 WP_007409441.1 CPBP family intramembrane glutamic endopeptidase -
  U471_RS10520 (U471_21870) recS 2209362..2210852 (-) 1491 WP_012117879.1 RecQ family ATP-dependent DNA helicase Machinery gene
  U471_RS10525 (U471_21880) - 2210845..2211903 (-) 1059 WP_012117880.1 helix-turn-helix domain-containing protein -
  U471_RS10530 (U471_21890) - 2212172..2212420 (+) 249 WP_003153403.1 ferredoxin -
  U471_RS10535 (U471_21900) - 2212560..2213132 (-) 573 WP_012117881.1 ECF transporter S component -
  U471_RS10540 (U471_21920) serA 2213621..2215198 (+) 1578 WP_007409437.1 phosphoglycerate dehydrogenase -

Sequence

Protein


Download         Length: 496 a.a.        Molecular weight: 55955.02 Da        Isoelectric Point: 6.2484

>NTDB_id=52365 U471_RS10520 WP_012117879.1 2209362..2210852(-) (recS) [Bacillus amyloliquefaciens CC178]
MTELHKALSKYFGLHSFKKGQEEIMTSVLQKKDTIAMLPTGGGKSLCYQLPGYMMDGLVLIISPLLSLMEDQVQQLKAKG
EKRVAALNSMLNSAERHFILSNISRYKFLYMSPEALSSPYVLNRLKNVPVSLFVIDEAHCISEWGHDFRPDYSKLGPFRQ
ALGKPPVLALTATATKETLRDVTDVLGLEHAVRHLYSVNRPNILLAAEHLADNAEKISRLTELAEKLEGPGIIYCPTRKW
AEELAAELNEKTGKRTDYYHGGMDTGDRILIQQQFIHNQLDCICCTNAFGMGVDKSDIRFVIHFYPPQTAEAFMQEIGRA
GRDGSPSVSILLRAPGDTELQQQIIQTESLSDYDLEGILAIIRDAGTGDERKLRDVLINKGVQETQARTAVHLYLQGKTT
KEQLQEELTYRVEKKLRKMNRFSALLERKECIREALLSYFDEPYEPDGQTGQCCSSCGLDLAPYEQKGERKNMERFEDWK
LELGRIFGSESAGEFS

Nucleotide


Download         Length: 1491 bp        

>NTDB_id=52365 U471_RS10520 WP_012117879.1 2209362..2210852(-) (recS) [Bacillus amyloliquefaciens CC178]
ATGACTGAGCTGCATAAAGCTTTATCCAAGTATTTTGGTTTGCATTCCTTTAAAAAAGGGCAGGAAGAGATTATGACTAG
CGTGCTCCAAAAAAAGGATACGATCGCCATGCTTCCGACCGGCGGGGGAAAATCATTATGCTATCAGCTCCCGGGTTACA
TGATGGACGGGCTGGTGCTGATTATTTCGCCGCTCCTTTCATTAATGGAAGATCAGGTGCAGCAGCTGAAAGCGAAAGGA
GAAAAGCGGGTTGCGGCATTAAACAGCATGCTGAATTCCGCAGAGCGGCATTTTATCCTCAGCAACATCAGCCGGTATAA
ATTTCTCTATATGTCTCCTGAAGCCCTTTCTTCACCTTATGTGCTGAACCGTTTGAAAAATGTCCCGGTCAGTTTATTTG
TTATTGATGAGGCTCATTGCATATCAGAATGGGGACATGATTTCAGGCCTGATTACTCGAAGCTCGGACCTTTCAGGCAG
GCACTCGGAAAGCCGCCTGTATTGGCGCTGACCGCAACAGCGACAAAAGAAACGCTCAGAGACGTGACGGATGTGCTCGG
ACTTGAGCATGCGGTGCGTCATCTTTATTCAGTCAACCGGCCGAATATTCTCCTGGCGGCAGAACATTTGGCGGATAATG
CCGAAAAAATAAGCAGGCTCACGGAGCTTGCCGAAAAGCTTGAAGGCCCGGGTATCATATATTGTCCGACCAGAAAATGG
GCGGAAGAGCTTGCGGCTGAGCTGAACGAAAAAACGGGAAAGCGGACGGATTATTATCACGGCGGAATGGATACAGGCGA
CAGGATTTTAATCCAGCAGCAATTTATCCATAACCAGCTTGATTGCATCTGCTGCACCAATGCGTTCGGCATGGGTGTGG
ATAAGTCAGATATCCGCTTTGTCATTCACTTTTATCCTCCCCAAACGGCCGAGGCCTTTATGCAGGAAATCGGCAGAGCG
GGACGCGACGGCAGCCCGAGTGTCAGTATTTTGCTGAGGGCGCCCGGCGATACCGAGCTTCAGCAGCAGATTATTCAGAC
AGAAAGCCTGTCTGATTATGACCTGGAAGGCATTTTGGCTATCATACGGGATGCCGGTACGGGTGATGAACGAAAGCTTC
GGGACGTTCTGATCAATAAAGGCGTCCAGGAAACACAGGCGCGAACGGCCGTCCATCTGTATCTGCAAGGAAAAACCACA
AAAGAGCAGCTGCAGGAAGAACTGACATACCGCGTGGAAAAGAAGCTGCGTAAAATGAATCGTTTTTCGGCGTTATTAGA
GCGGAAAGAATGTATAAGAGAAGCGCTGCTGTCTTATTTTGATGAACCGTATGAGCCTGATGGTCAAACCGGACAATGCT
GCAGCAGCTGCGGACTTGATCTGGCTCCGTACGAGCAAAAAGGAGAACGTAAAAATATGGAACGGTTTGAAGATTGGAAG
CTGGAATTAGGCCGGATTTTCGGATCAGAGTCTGCGGGTGAGTTCAGCTGA

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(215-323)

DEAD/DEAH box helicase (DEAD)

(20-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A7Z652

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recS Bacillus subtilis subsp. subtilis str. 168

68.347

100

0.683

Multiple sequence alignment