Detailed information    

insolico Bioinformatically predicted

Overview

Name   ylbF   Type   Regulator
Locus tag   U471_RS07385 Genome accession   NC_022653
Coordinates   1480094..1480543 (+) Length   149 a.a.
NCBI ID   WP_003154472.1    Uniprot ID   A7Z4C2
Organism   Bacillus amyloliquefaciens CC178     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 1475094..1485543
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U471_RS07345 (U471_15120) ctaE 1475212..1475835 (+) 624 WP_003154482.1 cytochrome c oxidase subunit III -
  U471_RS07350 (U471_15130) ctaF 1475838..1476170 (+) 333 WP_007409686.1 cytochrome c oxidase subunit IVB -
  U471_RS07355 (U471_15140) ctaG 1476195..1477079 (+) 885 WP_023356881.1 cytochrome c oxidase assembly factor CtaG -
  U471_RS07360 (U471_15150) - 1477114..1477473 (-) 360 WP_012117490.1 YugN family protein -
  U471_RS07365 (U471_15160) - 1477614..1478057 (+) 444 WP_003154478.1 CBS domain-containing protein -
  U471_RS07370 (U471_15170) - 1478142..1479182 (+) 1041 WP_007409690.1 CAP domain-containing protein -
  U471_RS07375 (U471_15180) - 1479358..1479768 (+) 411 WP_012117491.1 YlbD family protein -
  U471_RS07380 (U471_15190) - 1479784..1480023 (+) 240 WP_003154475.1 YlbE-like family protein -
  U471_RS07385 (U471_15200) ylbF 1480094..1480543 (+) 450 WP_003154472.1 YlbF family regulator Regulator
  U471_RS07390 (U471_15210) - 1480602..1480874 (+) 273 WP_003154470.1 YlbG family protein -
  U471_RS07395 (U471_15230) rsmD 1481174..1481728 (+) 555 WP_007409693.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  U471_RS07400 (U471_15240) coaD 1481733..1482215 (+) 483 WP_007409694.1 pantetheine-phosphate adenylyltransferase -
  U471_RS07405 (U471_15250) ylbJ 1482234..1483460 (-) 1227 WP_012117492.1 sporulation integral membrane protein YlbJ -
  U471_RS07410 (U471_15260) - 1483640..1484419 (+) 780 WP_007409696.1 patatin family protein -
  U471_RS07415 (U471_15270) sepM 1484425..1485447 (+) 1023 WP_012117493.1 SepM family pheromone-processing serine protease Regulator

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16777.86 Da        Isoelectric Point: 4.8089

>NTDB_id=52341 U471_RS07385 WP_003154472.1 1480094..1480543(+) (ylbF) [Bacillus amyloliquefaciens CC178]
MYATIESVKLQSEAEQLAGMILQSETAENYRDCYKRLREDEEAGRIIRSFMSVKEQYEDVQRFGKYHPDYREISRKMREM
KRELDLNDKVAEFKKAETELQSLLDEISIELGTAVSEHVKVPTGNPYFDGLSSCGGGCGSGGGCGCKVS

Nucleotide


Download         Length: 450 bp        

>NTDB_id=52341 U471_RS07385 WP_003154472.1 1480094..1480543(+) (ylbF) [Bacillus amyloliquefaciens CC178]
ATGTATGCAACAATTGAGTCCGTCAAGCTTCAAAGTGAAGCGGAGCAGCTTGCCGGCATGATTCTGCAGTCTGAGACGGC
TGAAAATTACCGCGATTGTTACAAGCGTCTCCGTGAAGATGAAGAGGCAGGGCGGATCATTCGTTCTTTTATGAGCGTTA
AAGAGCAGTATGAGGATGTGCAGCGCTTTGGCAAATACCATCCTGATTATAGAGAGATTTCCCGCAAAATGAGAGAAATG
AAGCGGGAACTGGATTTAAACGATAAGGTGGCCGAATTTAAAAAAGCGGAGACTGAGCTTCAGTCGCTGCTTGACGAGAT
CAGCATTGAACTCGGAACGGCCGTCTCGGAGCATGTAAAAGTGCCGACGGGGAATCCTTATTTTGACGGCCTGTCATCCT
GCGGCGGCGGGTGCGGTTCCGGCGGCGGCTGCGGATGCAAAGTTTCCTGA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(12-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A7Z4C2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ylbF Bacillus subtilis subsp. subtilis str. 168

87.919

100

0.879

Multiple sequence alignment