Detailed information    

insolico Bioinformatically predicted

Overview

Name   ylbF   Type   Regulator
Locus tag   K3G18_RS07985 Genome accession   NZ_CP080629
Coordinates   1532686..1533135 (+) Length   149 a.a.
NCBI ID   WP_003221370.1    Uniprot ID   G4NWT8
Organism   Bacillus subtilis strain YPS-32     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 1527686..1538135
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K3G18_RS07945 (K3G18_07945) ctaE 1527705..1528328 (+) 624 WP_003232244.1 cytochrome c oxidase subunit III -
  K3G18_RS07950 (K3G18_07950) ctaF 1528331..1528663 (+) 333 WP_003232242.1 cytochrome c oxidase subunit IVB -
  K3G18_RS07955 (K3G18_07955) ctaG 1528690..1529583 (+) 894 WP_003244967.1 cytochrome c oxidase assembly factor CtaG -
  K3G18_RS07960 (K3G18_07960) ylbA 1529615..1529977 (-) 363 WP_003232238.1 YugN family protein -
  K3G18_RS07965 (K3G18_07965) ylbB 1530117..1530563 (+) 447 WP_003221362.1 CBS domain-containing protein -
  K3G18_RS07970 (K3G18_07970) ylbC 1530647..1531687 (+) 1041 WP_032721504.1 CAP domain-containing protein -
  K3G18_RS07975 (K3G18_07975) ylbD 1531917..1532315 (+) 399 WP_003232233.1 YlbD family protein -
  K3G18_RS07980 (K3G18_07980) ylbE 1532331..1532570 (+) 240 WP_003232231.1 YlbE-like family protein -
  K3G18_RS07985 (K3G18_07985) ylbF 1532686..1533135 (+) 450 WP_003221370.1 regulatory iron-sulfur-containing complex subunit RicF Regulator
  K3G18_RS07990 (K3G18_07990) ylbG 1533190..1533462 (+) 273 WP_009967171.1 YlbG family protein -
  K3G18_RS07995 (K3G18_07995) rsmD 1533785..1534339 (+) 555 WP_003232227.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  K3G18_RS08000 (K3G18_08000) coaD 1534344..1534829 (+) 486 WP_003245283.1 pantetheine-phosphate adenylyltransferase -
  K3G18_RS08005 (K3G18_08005) spoVV 1534840..1536066 (-) 1227 WP_003245492.1 dipicolinic acid transporter SpoVV -
  K3G18_RS08010 (K3G18_08010) ylbK 1536247..1537029 (+) 783 WP_003232221.1 patatin family protein -
  K3G18_RS08015 (K3G18_08015) sepM 1537031..1538056 (+) 1026 WP_003245451.1 protease DdcP Regulator

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16913.96 Da        Isoelectric Point: 4.9284

>NTDB_id=521247 K3G18_RS07985 WP_003221370.1 1532686..1533135(+) (ylbF) [Bacillus subtilis strain YPS-32]
MYATMESVRLQSEAQQLAEMILQSETAENYRNCYKRLQEDEEAGRIIRSFIKIKEQYEDVQRFGKYHPDYREISRKMREI
KRELDLNDKVADFKRAENELQSILDEVSVEIGTAVSEHVKVPTGNPYFDGLSSCGGGCGSGGSCGCKVS

Nucleotide


Download         Length: 450 bp        

>NTDB_id=521247 K3G18_RS07985 WP_003221370.1 1532686..1533135(+) (ylbF) [Bacillus subtilis strain YPS-32]
ATGTATGCGACGATGGAATCCGTGCGGCTTCAAAGTGAAGCTCAGCAGCTTGCCGAGATGATTCTGCAGTCGGAGACGGC
TGAGAACTACCGCAATTGTTACAAGCGTCTCCAGGAAGATGAAGAGGCAGGTCGGATTATTCGTTCTTTTATCAAAATAA
AAGAGCAGTATGAGGATGTACAGCGTTTTGGCAAATATCATCCTGACTATAGAGAAATATCCCGGAAAATGAGGGAGATC
AAACGTGAGCTGGACCTGAACGATAAGGTGGCTGACTTCAAGAGAGCTGAAAATGAGCTCCAGTCCATTCTTGATGAGGT
CAGCGTTGAGATTGGGACAGCTGTTTCGGAGCATGTGAAAGTTCCGACTGGGAACCCTTATTTTGACGGTTTGTCTTCAT
GCGGAGGCGGTTGCGGTTCAGGCGGAAGCTGCGGATGTAAAGTGTCCTGA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(12-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NWT8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ylbF Bacillus subtilis subsp. subtilis str. 168

100

100

1