Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | JF379_RS01620 | Genome accession | NZ_CP066488 |
| Coordinates | 364205..364708 (+) | Length | 167 a.a. |
| NCBI ID | WP_000934799.1 | Uniprot ID | A0A7U7IE99 |
| Organism | Staphylococcus aureus strain ncr_155_F133 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 360142..385645 | 364205..364708 | within | 0 |
Gene organization within MGE regions
Location: 360142..385645
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JF379_RS01590 (JF379_01590) | - | 360142..360987 (+) | 846 | WP_001566903.1 | ParB/RepB/Spo0J family partition protein | - |
| JF379_RS01595 (JF379_01595) | - | 361144..362025 (+) | 882 | WP_001077602.1 | mechanosensitive ion channel family protein | - |
| JF379_RS01600 (JF379_01600) | - | 362055..362258 (+) | 204 | WP_000157345.1 | DUF951 domain-containing protein | - |
| JF379_RS01605 (JF379_01605) | ychF | 362270..363367 (+) | 1098 | WP_001218732.1 | redox-regulated ATPase YchF | - |
| JF379_RS01610 (JF379_01610) | - | 363453..363644 (-) | 192 | WP_001052483.1 | hypothetical protein | - |
| JF379_RS01615 (JF379_01615) | rpsF | 363888..364184 (+) | 297 | WP_001261460.1 | 30S ribosomal protein S6 | - |
| JF379_RS01620 (JF379_01620) | ssbA | 364205..364708 (+) | 504 | WP_000934799.1 | single-stranded DNA-binding protein | Machinery gene |
| JF379_RS01625 (JF379_01625) | rpsR | 364760..365002 (+) | 243 | WP_000897044.1 | 30S ribosomal protein S18 | - |
| JF379_RS01630 (JF379_01630) | - | 365196..366203 (-) | 1008 | WP_198914160.1 | Abi family protein | - |
| JF379_RS01635 (JF379_01635) | - | 366208..367422 (-) | 1215 | WP_198914161.1 | tyrosine-type recombinase/integrase | - |
| JF379_RS01640 (JF379_01640) | - | 367875..368573 (-) | 699 | WP_198914162.1 | helix-turn-helix domain-containing protein | - |
| JF379_RS01645 (JF379_01645) | - | 368717..368929 (+) | 213 | WP_198914163.1 | helix-turn-helix domain-containing protein | - |
| JF379_RS01650 (JF379_01650) | - | 368930..369202 (+) | 273 | WP_198914164.1 | helix-turn-helix domain-containing protein | - |
| JF379_RS01655 (JF379_01655) | - | 369214..369369 (+) | 156 | WP_000784883.1 | hypothetical protein | - |
| JF379_RS01660 (JF379_01660) | - | 369354..369557 (+) | 204 | WP_001231376.1 | hypothetical protein | - |
| JF379_RS01665 (JF379_01665) | - | 369559..369942 (+) | 384 | WP_198917964.1 | pathogenicity island protein | - |
| JF379_RS01670 (JF379_01670) | tscT | 369943..370242 (+) | 300 | WP_198917965.1 | type II toxin-antitoxin system toxin TscT | - |
| JF379_RS01675 (JF379_01675) | - | 370329..371198 (+) | 870 | WP_198914168.1 | primase alpha helix C-terminal domain-containing protein | - |
| JF379_RS01680 (JF379_01680) | - | 371210..372580 (+) | 1371 | WP_198914169.1 | DNA primase family protein | - |
| JF379_RS01685 (JF379_01685) | - | 372823..373185 (+) | 363 | WP_198914170.1 | pathogenicity island protein | - |
| JF379_RS01690 (JF379_01690) | - | 373173..373445 (+) | 273 | WP_233144383.1 | hypothetical protein | - |
| JF379_RS01695 (JF379_01695) | - | 373447..374088 (+) | 642 | WP_198917966.1 | pathogenicity island protein | - |
| JF379_RS01700 (JF379_01700) | - | 374606..374947 (+) | 342 | WP_198917967.1 | pathogenicity island protein | - |
| JF379_RS01705 (JF379_01705) | - | 374959..375537 (+) | 579 | WP_198917968.1 | pathogenicity island protein | - |
| JF379_RS01710 (JF379_01710) | - | 375555..375773 (+) | 219 | WP_194382485.1 | capsid morphogenesis B protein | - |
| JF379_RS01715 (JF379_01715) | - | 375824..376351 (+) | 528 | WP_198917969.1 | spore coat protein | - |
| JF379_RS01720 (JF379_01720) | - | 376484..376696 (+) | 213 | WP_198918068.1 | LuxR C-terminal-related transcriptional regulator | - |
| JF379_RS01725 (JF379_01725) | - | 376693..377262 (+) | 570 | WP_198917970.1 | terminase small subunit | - |
| JF379_RS01730 (JF379_01730) | - | 377612..377782 (+) | 171 | WP_198914178.1 | VraH family peptide resistance protein | - |
| JF379_RS14335 | - | 378217..378333 (+) | 117 | Protein_346 | hypothetical protein | - |
| JF379_RS01735 (JF379_01735) | - | 378656..379171 (+) | 516 | WP_123097623.1 | hypothetical protein | - |
| JF379_RS01740 (JF379_01740) | spn | 379838..380149 (+) | 312 | WP_198914179.1 | SPIN family peroxidase inhibitor | - |
| JF379_RS01745 (JF379_01745) | - | 380701..381639 (-) | 939 | WP_072419886.1 | Abi family protein | - |
| JF379_RS01750 (JF379_01750) | - | 381690..382392 (-) | 703 | Protein_350 | tyrosine-type recombinase/integrase | - |
| JF379_RS01755 (JF379_01755) | - | 382598..383209 (+) | 612 | WP_000473942.1 | exotoxin beta-grasp domain-containing protein | - |
| JF379_RS01760 (JF379_01760) | - | 383578..383950 (+) | 373 | Protein_352 | YxeA family protein | - |
| JF379_RS01765 (JF379_01765) | - | 384127..384699 (+) | 573 | WP_000769722.1 | PepSY domain-containing protein | - |
| JF379_RS01770 (JF379_01770) | - | 384837..385100 (-) | 264 | WP_001055897.1 | helix-turn-helix domain-containing protein | - |
| JF379_RS01775 (JF379_01775) | - | 385394..385645 (+) | 252 | WP_000466739.1 | GlsB/YeaQ/YmgE family stress response membrane protein | - |
Sequence
Protein
Download Length: 167 a.a. Molecular weight: 18539.12 Da Isoelectric Point: 4.7305
>NTDB_id=520410 JF379_RS01620 WP_000934799.1 364205..364708(+) (ssbA) [Staphylococcus aureus strain ncr_155_F133]
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQADNVNNYLSKGSLAGVDGRLQSR
NYENQEGRRVFVTEVVCDSVQFLEPKNAQQNGGQRQQNEFQDYGQGFGGQQSGQNNSYNNSSNTKQSDNPFANANGPIDI
SDDDLPF
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQADNVNNYLSKGSLAGVDGRLQSR
NYENQEGRRVFVTEVVCDSVQFLEPKNAQQNGGQRQQNEFQDYGQGFGGQQSGQNNSYNNSSNTKQSDNPFANANGPIDI
SDDDLPF
Nucleotide
Download Length: 504 bp
>NTDB_id=520410 JF379_RS01620 WP_000934799.1 364205..364708(+) (ssbA) [Staphylococcus aureus strain ncr_155_F133]
ATGCTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCGGAATACAGAACCACTCCCTCAGGTGTGAGTGTAGC
GACATTCACTCTTGCAGTAAATCGTACGTTCACGAATGCTCAAGGGGAGCGCGAAGCAGATTTTATTAACTGTGTTGTTT
TTAGAAGACAAGCAGATAATGTAAATAACTATTTATCTAAAGGTAGTTTAGCTGGTGTAGATGGTCGCTTACAATCCCGT
AATTATGAAAATCAAGAAGGTCGTCGTGTGTTTGTTACTGAAGTTGTGTGTGATAGTGTTCAATTCCTTGAACCTAAAAA
TGCGCAACAAAATGGTGGCCAACGTCAACAAAATGAATTCCAAGATTACGGTCAAGGATTCGGTGGTCAACAATCAGGAC
AAAACAATTCGTACAATAATTCATCAAACACGAAACAATCTGATAATCCATTTGCAAATGCAAACGGACCGATTGATATA
AGTGATGATGACTTACCATTCTAA
ATGCTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCGGAATACAGAACCACTCCCTCAGGTGTGAGTGTAGC
GACATTCACTCTTGCAGTAAATCGTACGTTCACGAATGCTCAAGGGGAGCGCGAAGCAGATTTTATTAACTGTGTTGTTT
TTAGAAGACAAGCAGATAATGTAAATAACTATTTATCTAAAGGTAGTTTAGCTGGTGTAGATGGTCGCTTACAATCCCGT
AATTATGAAAATCAAGAAGGTCGTCGTGTGTTTGTTACTGAAGTTGTGTGTGATAGTGTTCAATTCCTTGAACCTAAAAA
TGCGCAACAAAATGGTGGCCAACGTCAACAAAATGAATTCCAAGATTACGGTCAAGGATTCGGTGGTCAACAATCAGGAC
AAAACAATTCGTACAATAATTCATCAAACACGAAACAATCTGATAATCCATTTGCAAATGCAAACGGACCGATTGATATA
AGTGATGATGACTTACCATTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
65.341 |
100 |
0.689 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
54.971 |
100 |
0.563 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
58.491 |
63.473 |
0.371 |
| ssb | Glaesserella parasuis strain SC1401 |
34.463 |
100 |
0.365 |