Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | JC775_RS08880 | Genome accession | NZ_CP066192 |
| Coordinates | 1786317..1786655 (+) | Length | 112 a.a. |
| NCBI ID | WP_041809657.1 | Uniprot ID | A0AAX2CG79 |
| Organism | Bacillus cytotoxicus strain E17.4 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 1781317..1791655
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JC775_RS08860 (JC775_08860) | - | 1781754..1782407 (-) | 654 | WP_087098559.1 | hypothetical protein | - |
| JC775_RS08865 (JC775_08865) | - | 1782516..1783163 (+) | 648 | WP_012094096.1 | HD domain-containing protein | - |
| JC775_RS08870 (JC775_08870) | - | 1783160..1785052 (+) | 1893 | WP_210370689.1 | ABC-F family ATP-binding cassette domain-containing protein | - |
| JC775_RS08875 (JC775_08875) | - | 1785128..1785859 (+) | 732 | WP_087098563.1 | Bax inhibitor-1/YccA family protein | - |
| JC775_RS08880 (JC775_08880) | ssbA | 1786317..1786655 (+) | 339 | WP_041809657.1 | single-stranded DNA-binding protein | Machinery gene |
| JC775_RS08885 (JC775_08885) | - | 1786812..1787939 (+) | 1128 | WP_048722873.1 | conserved virulence factor C family protein | - |
| JC775_RS08890 (JC775_08890) | - | 1787941..1788324 (+) | 384 | WP_012094101.1 | DUF393 domain-containing protein | - |
| JC775_RS08895 (JC775_08895) | - | 1788409..1788843 (+) | 435 | WP_087098565.1 | BrxA/BrxB family bacilliredoxin | - |
| JC775_RS08900 (JC775_08900) | - | 1788898..1789674 (+) | 777 | WP_087098567.1 | class I SAM-dependent methyltransferase | - |
Sequence
Protein
Download Length: 112 a.a. Molecular weight: 13080.04 Da Isoelectric Point: 9.7832
>NTDB_id=518345 JC775_RS08880 WP_041809657.1 1786317..1786655(+) (ssbA) [Bacillus cytotoxicus strain E17.4]
MMNRVVLVGRLTKDPELYYTKQGIPYARICIAVNRGFRNSLGEQQADYIYCVVWRKSAENVLEYCRKGSLVGITGRIHTS
NYENDQGKRIYRTEVVIERITFLERKREISNG
MMNRVVLVGRLTKDPELYYTKQGIPYARICIAVNRGFRNSLGEQQADYIYCVVWRKSAENVLEYCRKGSLVGITGRIHTS
NYENDQGKRIYRTEVVIERITFLERKREISNG
Nucleotide
Download Length: 339 bp
>NTDB_id=518345 JC775_RS08880 WP_041809657.1 1786317..1786655(+) (ssbA) [Bacillus cytotoxicus strain E17.4]
ATGATGAATCGAGTTGTATTAGTTGGAAGATTAACAAAAGATCCAGAATTATACTATACAAAGCAAGGAATTCCTTATGC
ACGTATTTGTATTGCTGTAAATAGAGGATTTCGAAATAGTTTAGGGGAACAACAAGCAGATTATATTTATTGTGTTGTTT
GGAGAAAGTCAGCTGAGAATGTATTAGAGTACTGCCGGAAAGGTTCTCTCGTTGGCATTACGGGCCGTATTCATACGAGC
AATTACGAGAATGATCAAGGAAAGAGAATATATAGAACAGAAGTTGTAATTGAAAGAATTACGTTTTTAGAAAGGAAAAG
AGAGATTTCAAATGGATGA
ATGATGAATCGAGTTGTATTAGTTGGAAGATTAACAAAAGATCCAGAATTATACTATACAAAGCAAGGAATTCCTTATGC
ACGTATTTGTATTGCTGTAAATAGAGGATTTCGAAATAGTTTAGGGGAACAACAAGCAGATTATATTTATTGTGTTGTTT
GGAGAAAGTCAGCTGAGAATGTATTAGAGTACTGCCGGAAAGGTTCTCTCGTTGGCATTACGGGCCGTATTCATACGAGC
AATTACGAGAATGATCAAGGAAAGAGAATATATAGAACAGAAGTTGTAATTGAAAGAATTACGTTTTTAGAAAGGAAAAG
AGAGATTTCAAATGGATGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
58.491 |
94.643 |
0.554 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
54.717 |
94.643 |
0.518 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
53.774 |
94.643 |
0.509 |
| ssbB | Streptococcus sobrinus strain NIDR 6715-7 |
41.667 |
96.429 |
0.402 |
| ssbB/cilA | Streptococcus pneumoniae TIGR4 |
39.623 |
94.643 |
0.375 |
| ssbB/cilA | Streptococcus mitis NCTC 12261 |
39.623 |
94.643 |
0.375 |
| ssbB | Lactococcus lactis subsp. cremoris KW2 |
43.158 |
84.821 |
0.366 |
| ssbB/cilA | Streptococcus pneumoniae Rx1 |
38.679 |
94.643 |
0.366 |
| ssbB/cilA | Streptococcus pneumoniae D39 |
38.679 |
94.643 |
0.366 |
| ssbB/cilA | Streptococcus pneumoniae R6 |
38.679 |
94.643 |
0.366 |
| ssbB/cilA | Streptococcus mitis SK321 |
38.679 |
94.643 |
0.366 |
| ssbA | Streptococcus mutans UA159 |
38.679 |
94.643 |
0.366 |