Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   JC773_RS11635 Genome accession   NZ_CP066185
Coordinates   2289637..2289960 (-) Length   107 a.a.
NCBI ID   WP_011984082.1    Uniprot ID   A7GMH1
Organism   Bacillus cytotoxicus strain PDT2.12     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2284637..2294960
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JC773_RS11605 (JC773_11605) - 2284979..2285186 (+) 208 Protein_2210 hypothetical protein -
  JC773_RS11610 (JC773_11610) - 2285344..2286615 (+) 1272 WP_210351507.1 D-alanyl-D-alanine carboxypeptidase family protein -
  JC773_RS11615 (JC773_11615) - 2286747..2287322 (+) 576 WP_011984078.1 signal peptidase I -
  JC773_RS11620 (JC773_11620) - 2287368..2287958 (+) 591 WP_011984079.1 TasA family protein -
  JC773_RS11625 (JC773_11625) - 2288049..2288735 (+) 687 WP_011984080.1 DUF4047 domain-containing protein -
  JC773_RS11630 (JC773_11630) calY 2288965..2289558 (+) 594 WP_011984081.1 biofilm matrix protein CalY -
  JC773_RS11635 (JC773_11635) sinR 2289637..2289960 (-) 324 WP_011984082.1 helix-turn-helix domain-containing protein Regulator
  JC773_RS11640 (JC773_11640) - 2290038..2290169 (-) 132 WP_011984083.1 anti-repressor SinI family protein -
  JC773_RS11645 (JC773_11645) - 2290531..2292918 (+) 2388 WP_210351508.1 immune inhibitor A domain-containing protein -
  JC773_RS11650 (JC773_11650) - 2293125..2294489 (+) 1365 WP_210351509.1 aldehyde dehydrogenase -

Sequence

Protein


Download         Length: 107 a.a.        Molecular weight: 12380.21 Da        Isoelectric Point: 8.6049

>NTDB_id=518260 JC773_RS11635 WP_011984082.1 2289637..2289960(-) (sinR) [Bacillus cytotoxicus strain PDT2.12]
MIGERIKRLRLQRGISLTELAEKAGVAKSYISSIERNLQQNPSIQFLEKIAAVLQIPIDTLLHDTTPLENQLDSEWTHLV
KEAMNSGVSKEQFREFIEFSKWKQNQK

Nucleotide


Download         Length: 324 bp        

>NTDB_id=518260 JC773_RS11635 WP_011984082.1 2289637..2289960(-) (sinR) [Bacillus cytotoxicus strain PDT2.12]
ATGATTGGAGAACGTATAAAACGCCTTCGCTTACAAAGAGGGATTTCTTTAACAGAACTTGCTGAAAAGGCCGGTGTTGC
AAAGTCCTACATTAGCTCCATTGAACGTAATTTACAACAAAATCCGTCCATTCAATTTTTAGAAAAAATCGCAGCCGTTC
TGCAAATACCAATTGACACACTTCTTCATGACACAACACCGTTAGAAAATCAATTAGACTCTGAATGGACACACCTTGTT
AAAGAAGCAATGAACTCTGGTGTCTCAAAAGAACAATTCCGTGAATTCATTGAGTTTAGTAAATGGAAACAAAATCAAAA
ATAA

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-61)

Anti-repressor SinI (SinI)

(72-99)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A7GMH1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

64.22

100

0.654