Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   JC777_RS21135 Genome accession   NZ_CP066184
Coordinates   3958335..3958658 (+) Length   107 a.a.
NCBI ID   WP_011984082.1    Uniprot ID   A7GMH1
Organism   Bacillus cytotoxicus strain SM1.1     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IScluster/Tn 3958795..3960377 3958335..3958658 flank 137


Gene organization within MGE regions


Location: 3958335..3960377
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JC777_RS21135 (JC777_21140) sinR 3958335..3958658 (+) 324 WP_011984082.1 helix-turn-helix domain-containing protein Regulator
  JC777_RS21140 (JC777_21145) - 3958795..3960164 (+) 1370 Protein_3978 IS1182 family transposase -

Sequence

Protein


Download         Length: 107 a.a.        Molecular weight: 12380.21 Da        Isoelectric Point: 8.6049

>NTDB_id=518216 JC777_RS21135 WP_011984082.1 3958335..3958658(+) (sinR) [Bacillus cytotoxicus strain SM1.1]
MIGERIKRLRLQRGISLTELAEKAGVAKSYISSIERNLQQNPSIQFLEKIAAVLQIPIDTLLHDTTPLENQLDSEWTHLV
KEAMNSGVSKEQFREFIEFSKWKQNQK

Nucleotide


Download         Length: 324 bp        

>NTDB_id=518216 JC777_RS21135 WP_011984082.1 3958335..3958658(+) (sinR) [Bacillus cytotoxicus strain SM1.1]
ATGATTGGAGAACGTATAAAACGCCTTCGTTTACAAAGAGGGATTTCTTTAACAGAACTTGCTGAAAAGGCCGGTGTTGC
AAAGTCCTACATTAGCTCCATTGAACGTAATTTACAACAAAATCCGTCCATTCAATTTTTGGAAAAAATCGCAGCCGTTC
TGCAAATACCCATTGACACACTTCTTCATGACACAACACCGTTAGAAAATCAATTAGACTCTGAATGGACACACCTTGTT
AAAGAAGCAATGAACTCTGGTGTCTCAAAAGAACAATTCCGTGAATTCATTGAGTTTAGTAAATGGAAACAAAATCAAAA
ATAA

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-61)

Anti-repressor SinI (SinI)

(72-99)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A7GMH1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

64.22

100

0.654