Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   I9192_RS20215 Genome accession   NZ_CP066119
Coordinates   4314114..4315343 (+) Length   409 a.a.
NCBI ID   WP_005035382.1    Uniprot ID   -
Organism   Acinetobacter bereziniae strain GD03185     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4309114..4320343
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I9192_RS20175 (I9192_20170) rimP 4309630..4310154 (-) 525 WP_004826368.1 ribosome maturation factor RimP -
  I9192_RS20200 (I9192_20195) secG 4310947..4311288 (-) 342 WP_005035388.1 preprotein translocase subunit SecG -
  I9192_RS20205 (I9192_20200) tpiA 4311298..4312092 (-) 795 WP_005035386.1 triose-phosphate isomerase -
  I9192_RS20210 (I9192_20205) pilB 4312371..4314086 (+) 1716 WP_026040257.1 type IV-A pilus assembly ATPase PilB Machinery gene
  I9192_RS20215 (I9192_20210) pilC 4314114..4315343 (+) 1230 WP_005035382.1 type II secretion system F family protein Machinery gene
  I9192_RS20220 (I9192_20215) pilD 4315346..4316227 (+) 882 WP_005035380.1 A24 family peptidase Machinery gene
  I9192_RS20225 (I9192_20220) coaE 4316253..4316852 (+) 600 WP_005035377.1 dephospho-CoA kinase -
  I9192_RS20230 (I9192_20225) - 4316899..4317819 (-) 921 WP_005035375.1 DMT family transporter -
  I9192_RS20235 (I9192_20230) rlmB 4317860..4318612 (-) 753 WP_005035372.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  I9192_RS20240 (I9192_20235) - 4318756..4319079 (-) 324 WP_004718357.1 pyrimidine/purine nucleoside phosphorylase -

Sequence

Protein


Download         Length: 409 a.a.        Molecular weight: 45064.59 Da        Isoelectric Point: 9.9938

>NTDB_id=517495 I9192_RS20215 WP_005035382.1 4314114..4315343(+) (pilC) [Acinetobacter bereziniae strain GD03185]
MAAKKAQMMPTFAYDGVDRKGIKVKGELPARNMALAKVTLRKQGITIKTIREKKKNILEGLMKKKISTLDITIFTRQLAT
MMKAGVPLVQSFEIVAEGLENPSMREVVLGIKSEVEGGNTFAGALKKYPRYFDSLFCSLVESGEQSGALETMLDRVAIYK
EKSELLKQKIKKAMKYPMTVIVVAIIVTIILMVKVVPVFQGLFSSFGADLPAFTQMVVNMSNWMQSYWFIMIIFIAVSIA
SFLEAKKRSQKFRDLLDRTALKLPIFGDLVYKAIIARYSRTLATTFAAGVPLIEALESTAGATNNVVYEQAVMKIREDVA
TGQQLNFAMRVTNKFPSMAVQMVAIGEESGALDAMLDKVATHFENEVDNAVDGLTSMMEPLIMAILGVLVGGLVIAMYLP
IFQMGSVVG

Nucleotide


Download         Length: 1230 bp        

>NTDB_id=517495 I9192_RS20215 WP_005035382.1 4314114..4315343(+) (pilC) [Acinetobacter bereziniae strain GD03185]
ATGGCAGCTAAAAAAGCGCAAATGATGCCTACCTTTGCTTATGACGGGGTTGATCGTAAAGGAATCAAGGTCAAAGGAGA
ATTGCCTGCACGCAATATGGCACTCGCCAAAGTCACGTTGAGAAAACAAGGCATAACCATTAAAACCATTCGAGAAAAGA
AAAAGAATATTCTCGAAGGCTTAATGAAGAAGAAAATTTCAACTTTAGATATCACCATCTTCACCCGTCAGCTTGCCACC
ATGATGAAGGCGGGTGTTCCCTTAGTACAAAGTTTTGAAATTGTTGCCGAAGGTTTAGAAAACCCTTCTATGCGTGAAGT
TGTCCTAGGGATCAAGAGTGAAGTTGAAGGCGGAAATACTTTTGCTGGCGCCTTGAAAAAGTATCCTCGTTACTTTGACA
GCTTATTTTGCTCTCTGGTTGAATCTGGCGAACAATCGGGTGCTTTGGAGACCATGTTGGATCGTGTCGCGATTTATAAA
GAAAAAAGTGAATTATTAAAGCAAAAAATTAAAAAAGCCATGAAATATCCTATGACAGTGATTGTTGTTGCAATCATTGT
GACGATTATTTTGATGGTCAAAGTTGTACCTGTCTTTCAAGGCTTATTTAGTTCCTTTGGTGCAGATCTACCTGCCTTTA
CTCAAATGGTGGTGAATATGTCCAATTGGATGCAAAGCTATTGGTTTATTATGATTATCTTTATCGCAGTTAGTATTGCT
TCTTTTTTAGAAGCAAAAAAACGTAGTCAAAAATTCCGAGACTTACTAGACCGAACTGCACTCAAACTACCCATTTTTGG
CGATTTGGTTTACAAGGCGATTATTGCGCGTTATAGCCGCACCCTTGCAACTACCTTTGCGGCAGGGGTTCCCCTCATTG
AAGCACTAGAATCTACTGCGGGTGCAACCAACAATGTGGTTTACGAACAAGCTGTGATGAAAATTCGCGAAGATGTGGCT
ACAGGTCAACAACTAAATTTTGCCATGCGTGTAACCAATAAATTTCCCTCTATGGCTGTGCAGATGGTCGCCATTGGTGA
GGAATCAGGAGCACTGGATGCAATGCTCGATAAAGTGGCTACGCACTTCGAAAATGAAGTCGACAATGCTGTGGACGGTT
TAACCTCAATGATGGAGCCTTTAATTATGGCAATCTTAGGCGTCTTGGTTGGTGGTCTTGTGATTGCCATGTATCTTCCA
ATCTTCCAAATGGGTTCAGTGGTTGGTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(279-400)

Type II secretion system (T2SS), protein F (T2SSF)

(74-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baumannii D1279779

88.235

99.756

0.88
  pilC Acinetobacter baylyi ADP1

84.314

99.756

0.841
  pilC Pseudomonas stutzeri DSM 10701

59.852

99.267

0.594
  pilC Legionella pneumophila strain ERS1305867

53.58

99.022

0.531
  pilG Neisseria gonorrhoeae MS11

46.734

97.311

0.455
  pilG Neisseria meningitidis 44/76-A

46.734

97.311

0.455
  pilC Vibrio cholerae strain A1552

42.892

99.756

0.428
  pilC Vibrio campbellii strain DS40M4

41.481

99.022

0.411
  pilC Thermus thermophilus HB27

36.908

98.044

0.362