Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | I6I29_RS07755 | Genome accession | NZ_CP065998 |
| Coordinates | 1499078..1499491 (-) | Length | 137 a.a. |
| NCBI ID | WP_099989995.1 | Uniprot ID | - |
| Organism | Staphylococcus pseudintermedius strain FDAARGOS_1072 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 1494078..1504491
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| I6I29_RS07710 (I6I29_07710) | - | 1494343..1494663 (-) | 321 | WP_081378304.1 | hypothetical protein | - |
| I6I29_RS07715 (I6I29_07715) | - | 1494676..1494894 (-) | 219 | WP_075773716.1 | hypothetical protein | - |
| I6I29_RS07720 (I6I29_07720) | - | 1494887..1495309 (-) | 423 | WP_075773715.1 | RusA family crossover junction endodeoxyribonuclease | - |
| I6I29_RS07725 (I6I29_07725) | - | 1495293..1495514 (-) | 222 | WP_075773714.1 | hypothetical protein | - |
| I6I29_RS07730 (I6I29_07730) | - | 1495511..1496755 (-) | 1245 | WP_075773713.1 | DnaB helicase C-terminal domain-containing protein | - |
| I6I29_RS07735 (I6I29_07735) | - | 1496748..1497095 (-) | 348 | WP_075773712.1 | hypothetical protein | - |
| I6I29_RS07740 (I6I29_07740) | - | 1497100..1497846 (-) | 747 | WP_096536663.1 | DnaD domain protein | - |
| I6I29_RS07745 (I6I29_07745) | - | 1497839..1498513 (-) | 675 | WP_099989997.1 | putative HNHc nuclease | - |
| I6I29_RS07750 (I6I29_07750) | - | 1498514..1499065 (-) | 552 | WP_099989996.1 | NUMOD4 motif-containing HNH endonuclease | - |
| I6I29_RS07755 (I6I29_07755) | ssbA | 1499078..1499491 (-) | 414 | WP_099989995.1 | single-stranded DNA-binding protein | Machinery gene |
| I6I29_RS07760 (I6I29_07760) | - | 1499491..1500162 (-) | 672 | WP_031253729.1 | ERF family protein | - |
| I6I29_RS07765 (I6I29_07765) | - | 1500159..1500644 (-) | 486 | WP_020219718.1 | siphovirus Gp157 family protein | - |
| I6I29_RS07770 (I6I29_07770) | - | 1500628..1500891 (-) | 264 | WP_065520552.1 | hypothetical protein | - |
| I6I29_RS07775 (I6I29_07775) | - | 1500903..1501163 (-) | 261 | WP_099989994.1 | DUF1108 family protein | - |
| I6I29_RS07780 (I6I29_07780) | - | 1501245..1501421 (-) | 177 | WP_180291869.1 | hypothetical protein | - |
| I6I29_RS07785 (I6I29_07785) | - | 1501409..1501633 (-) | 225 | WP_015728800.1 | hypothetical protein | - |
| I6I29_RS07790 (I6I29_07790) | - | 1501630..1502373 (-) | 744 | WP_099989993.1 | BRO family protein | - |
| I6I29_RS07795 (I6I29_07795) | - | 1502451..1502678 (+) | 228 | WP_060830240.1 | hypothetical protein | - |
| I6I29_RS07800 (I6I29_07800) | - | 1502675..1502842 (-) | 168 | WP_015728797.1 | hypothetical protein | - |
| I6I29_RS07805 (I6I29_07805) | - | 1502948..1503142 (-) | 195 | WP_015728796.1 | hypothetical protein | - |
| I6I29_RS07810 (I6I29_07810) | - | 1503199..1503462 (+) | 264 | WP_037543667.1 | CRISPR-associated endonuclease Cas2 | - |
| I6I29_RS07815 (I6I29_07815) | - | 1503466..1503627 (-) | 162 | WP_037543668.1 | hypothetical protein | - |
| I6I29_RS07820 (I6I29_07820) | - | 1503641..1503910 (-) | 270 | WP_015728794.1 | helix-turn-helix transcriptional regulator | - |
| I6I29_RS07825 (I6I29_07825) | - | 1503929..1504081 (-) | 153 | Protein_1522 | transcriptional regulator | - |
Sequence
Protein
Download Length: 137 a.a. Molecular weight: 15584.18 Da Isoelectric Point: 6.3425
>NTDB_id=516221 I6I29_RS07755 WP_099989995.1 1499078..1499491(-) (ssbA) [Staphylococcus pseudintermedius strain FDAARGOS_1072]
MLNRVVLVGRLTKDPEFRTTQSGVEVATFTLAVNRNYKNKNGEQQADFINCIVFRKQAENVNNYLNKGNLAGVDGRLQSR
SYENQEGRRIFVTEVVCDSVQFLEPKSNGQSNSQAKQQQRQDNPFDNSDFDDSSLPF
MLNRVVLVGRLTKDPEFRTTQSGVEVATFTLAVNRNYKNKNGEQQADFINCIVFRKQAENVNNYLNKGNLAGVDGRLQSR
SYENQEGRRIFVTEVVCDSVQFLEPKSNGQSNSQAKQQQRQDNPFDNSDFDDSSLPF
Nucleotide
Download Length: 414 bp
>NTDB_id=516221 I6I29_RS07755 WP_099989995.1 1499078..1499491(-) (ssbA) [Staphylococcus pseudintermedius strain FDAARGOS_1072]
ATGCTCAACAGAGTCGTATTGGTAGGTCGATTAACAAAAGACCCGGAATTCAGAACGACGCAATCAGGCGTGGAGGTAGC
AACATTTACATTGGCAGTTAACCGCAATTACAAAAATAAAAACGGAGAACAACAAGCAGACTTTATAAACTGTATTGTTT
TTCGTAAGCAAGCAGAAAATGTGAACAACTATCTAAATAAAGGAAATCTTGCAGGTGTAGATGGCCGCTTACAATCACGC
AGTTACGAAAACCAAGAAGGCCGACGTATATTCGTTACAGAAGTTGTGTGCGATAGTGTGCAATTTTTAGAGCCTAAATC
TAATGGTCAATCGAACAGTCAAGCTAAACAACAACAAAGGCAGGACAATCCGTTTGATAACAGTGACTTTGATGACTCGT
CACTCCCGTTTTGA
ATGCTCAACAGAGTCGTATTGGTAGGTCGATTAACAAAAGACCCGGAATTCAGAACGACGCAATCAGGCGTGGAGGTAGC
AACATTTACATTGGCAGTTAACCGCAATTACAAAAATAAAAACGGAGAACAACAAGCAGACTTTATAAACTGTATTGTTT
TTCGTAAGCAAGCAGAAAATGTGAACAACTATCTAAATAAAGGAAATCTTGCAGGTGTAGATGGCCGCTTACAATCACGC
AGTTACGAAAACCAAGAAGGCCGACGTATATTCGTTACAGAAGTTGTGTGCGATAGTGTGCAATTTTTAGAGCCTAAATC
TAATGGTCAATCGAACAGTCAAGCTAAACAACAACAAAGGCAGGACAATCCGTTTGATAACAGTGACTTTGATGACTCGT
CACTCCCGTTTTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
71.963 |
78.102 |
0.562 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
58.879 |
78.102 |
0.46 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
57.547 |
77.372 |
0.445 |
| ssbB/cilA | Streptococcus pneumoniae TIGR4 |
40 |
100 |
0.409 |
| ssbB | Streptococcus sobrinus strain NIDR 6715-7 |
40 |
100 |
0.409 |
| ssbB/cilA | Streptococcus mitis NCTC 12261 |
40 |
100 |
0.409 |
| ssbB/cilA | Streptococcus pneumoniae Rx1 |
39.286 |
100 |
0.401 |
| ssbB/cilA | Streptococcus pneumoniae D39 |
39.286 |
100 |
0.401 |
| ssbB/cilA | Streptococcus pneumoniae R6 |
39.286 |
100 |
0.401 |
| ssbB/cilA | Streptococcus mitis SK321 |
39.286 |
100 |
0.401 |
| ssbA | Streptococcus mutans UA159 |
37.956 |
100 |
0.38 |