Detailed information NTG0515671

Bioinformatically predicted

Overview

• Name: recF
• Type: Machinery gene
• Locus tag: KZB15_RS10200
• Genome accession: NZ_CP079922
• Coordinates: 2023740..2024837 (+)
• Length: 365 a.a.
• NCBI ID: WP_000266662.1
• Uniprot ID: Q8DMX3
• Organism: Streptococcus pneumoniae strain R36A
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2018740..2029837

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
KZB15_RS10175 (KZB15_10180)	pgsA	2019261..2019806 (-)	546	WP_000712132.1	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	-
KZB15_RS10180 (KZB15_10185)	rodZ	2019817..2020638 (-)	822	WP_001227958.1	cytoskeleton protein RodZ	-
KZB15_RS10185 (KZB15_10190)	yfmH	2020680..2021963 (-)	1284	WP_000170194.1	EF-P 5-aminopentanol modification-associated protein YfmH	-
KZB15_RS10190 (KZB15_10195)	yfmF	2021960..2023210 (-)	1251	WP_000424263.1	EF-P 5-aminopentanol modification-associated protein YfmF	-
KZB15_RS10195 (KZB15_10200)	yaaA	2023369..2023737 (+)	369	WP_000455903.1	S4 domain-containing protein YaaA	-
KZB15_RS10200 (KZB15_10205)	recF	2023740..2024837 (+)	1098	WP_000266662.1	DNA replication/repair protein RecF	Machinery gene
KZB15_RS10205 (KZB15_10210)	guaB	2024888..2026366 (-)	1479	WP_000073428.1	IMP dehydrogenase	-
KZB15_RS10210 (KZB15_10215)	trpS	2026518..2027543 (-)	1026	WP_000165444.1	tryptophan--tRNA ligase	-
KZB15_RS10215 (KZB15_10220)	-	2027749..2029371 (+)	1623	WP_000958770.1	ATP-binding cassette domain-containing protein	-

Sequence

Protein

• Length: 365 a.a.
• Molecular weight: 41916.00 Da
• Isoelectric Point: 9.0596

>NTDB_id=515671 KZB15_RS10200 WP_000266662.1 2023740..2024837(+) (recF) [Streptococcus pneumoniae strain R36A]
MWLQHLSLKTFRNYKETKIDFNPKLNVFLGRNAQGKTNMLEAIYFLALTRSHRTRTDKNLIHFDEEQLHLSGLVQKKTGS
IPLEIELTQKGRVTKVNHLKQARLSDYVGHMNVVLFAPEDLQLIKGAPSIRRKFIDMELGQIKPIYLSDLTNYNHILKQR
NTYLKSAQKIDETFLSVLDDQLVDYGCRVMNHRLDFIKKLESFGRKKHFELSNQIEELSISYQSSVNITDKQNLSESFKI
ALEKSRSRDLFKKNTGVGPHRDDISFYINGMDASFGSQGQHRSLVLSIKLAEIELMESITTESPILLLDDVMSELDNTRQ
LKLLETISQSIQTFITTTSLDHLQNLPENLSIFTIQDGKASVNGN

Nucleotide

• Length: 1098 bp

>NTDB_id=515671 KZB15_RS10200 WP_000266662.1 2023740..2024837(+) (recF) [Streptococcus pneumoniae strain R36A]
ATGTGGCTACAACATCTATCTCTCAAGACTTTTCGTAATTACAAAGAAACGAAAATAGACTTTAATCCTAAATTGAATGT
CTTTTTGGGACGTAATGCACAAGGAAAAACAAACATGTTAGAGGCTATCTATTTTTTAGCCTTAACGCGTAGTCATCGAA
CTCGAACAGATAAAAATCTCATTCATTTTGATGAGGAACAACTTCATCTTTCAGGTCTCGTTCAGAAAAAAACTGGATCC
ATTCCCCTAGAAATCGAACTAACACAAAAAGGCCGTGTAACAAAAGTTAATCACTTAAAACAGGCACGCCTTTCAGATTA
TGTAGGACACATGAATGTTGTCTTATTTGCTCCTGAAGATTTACAACTAATTAAAGGAGCACCTTCGATTCGACGAAAAT
TCATTGATATGGAACTTGGGCAAATTAAGCCAATCTATTTATCTGACTTAACCAATTATAACCACATCCTAAAGCAAAGA
AACACTTACCTAAAATCAGCTCAAAAAATAGATGAAACATTCCTTTCTGTGTTAGATGATCAGCTAGTTGATTATGGATG
TCGTGTAATGAATCACCGCTTAGATTTCATAAAAAAACTAGAATCATTTGGGCGTAAGAAACATTTTGAACTCTCTAATC
AGATCGAAGAGTTGTCAATATCCTATCAATCTTCTGTCAATATAACTGACAAACAAAACTTATCCGAATCTTTCAAAATT
GCTTTAGAAAAAAGTAGATCCAGAGATTTATTTAAAAAGAATACTGGTGTCGGTCCTCATCGAGATGACATTTCTTTTTA
TATAAATGGGATGGATGCTAGTTTCGGAAGCCAAGGTCAACATCGTAGTCTCGTCCTCTCGATAAAATTAGCAGAAATCG
AATTAATGGAAAGCATTACCACAGAATCTCCTATATTACTGCTTGACGATGTGATGAGTGAACTTGACAACACTAGACAG
TTAAAATTATTAGAAACGATTTCTCAATCAATCCAAACCTTTATCACAACAACAAGCTTAGACCATCTTCAAAATCTGCC
AGAAAATCTAAGTATCTTCACTATTCAGGATGGTAAAGCTTCTGTAAATGGAAATTGA

Domains

Predicted by InterProScan.

• RecF/RecN/SMC N terminal domain (SMC_N) (3-358)

3D structure

• AlphaFold DB: Q8DMX3

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recF	Streptococcus pneumoniae R6	100	100	1
recF	Bacillus subtilis subsp. subtilis str. 168	45.902	100	0.46