Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   JAV55_RS12970 Genome accession   NZ_CP065943
Coordinates   2530233..2530526 (-) Length   97 a.a.
NCBI ID   WP_003183466.1    Uniprot ID   -
Organism   Bacillus licheniformis strain H2     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2525233..2535526
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JAV55_RS12925 (JAV55_12925) tasA 2525615..2526409 (-) 795 WP_003183447.1 biofilm matrix protein TasA -
  JAV55_RS12930 (JAV55_12930) sipW 2526483..2527067 (-) 585 WP_003183449.1 signal peptidase I SipW -
  JAV55_RS12935 (JAV55_12935) tapA 2527064..2527792 (-) 729 WP_003183451.1 amyloid fiber anchoring/assembly protein TapA -
  JAV55_RS12940 (JAV55_12940) - 2528069..2528389 (+) 321 WP_003183454.1 YqzG/YhdC family protein -
  JAV55_RS12945 (JAV55_12945) - 2528413..2528595 (-) 183 WP_003183456.1 YqzE family protein -
  JAV55_RS12950 (JAV55_12950) comGG 2528684..2529049 (-) 366 WP_003183459.1 competence type IV pilus minor pilin ComGG -
  JAV55_RS12955 (JAV55_12955) comGF 2529062..2529550 (-) 489 WP_011201694.1 competence type IV pilus minor pilin ComGF -
  JAV55_RS12960 (JAV55_12960) comGE 2529459..2529806 (-) 348 WP_009327907.1 competence type IV pilus minor pilin ComGE -
  JAV55_RS12965 (JAV55_12965) comGD 2529790..2530227 (-) 438 WP_009327905.1 competence type IV pilus minor pilin ComGD -
  JAV55_RS12970 (JAV55_12970) comGC 2530233..2530526 (-) 294 WP_003183466.1 competence type IV pilus major pilin ComGC Machinery gene
  JAV55_RS12975 (JAV55_12975) comGB 2530540..2531574 (-) 1035 WP_011198115.1 competence type IV pilus assembly protein ComGB Machinery gene
  JAV55_RS12980 (JAV55_12980) comGA 2531564..2532628 (-) 1065 WP_003183477.1 competence type IV pilus ATPase ComGA Machinery gene
  JAV55_RS12985 (JAV55_12985) - 2532785..2533624 (-) 840 WP_003183480.1 STAS domain-containing protein -
  JAV55_RS12995 (JAV55_12995) - 2533866..2534243 (-) 378 WP_003183482.1 Spx/MgsR family RNA polymerase-binding regulatory protein -
  JAV55_RS13000 (JAV55_13000) - 2534452..2534697 (+) 246 WP_003183483.1 DUF2626 domain-containing protein -
  JAV55_RS13005 (JAV55_13005) - 2534735..2535373 (-) 639 WP_003183485.1 MBL fold metallo-hydrolase -

Sequence

Protein


Download         Length: 97 a.a.        Molecular weight: 10725.62 Da        Isoelectric Point: 9.1200

>NTDB_id=515543 JAV55_RS12970 WP_003183466.1 2530233..2530526(-) (comGC) [Bacillus licheniformis strain H2]
MNEKGFTLIEMLVVMLVISILLLITIPNVTKHNQSIQKKGCEGLINMVQAQITAYQMDHDGKTPNRAELESEGYIKKNLK
CPNGKAIKISNGKAQAD

Nucleotide


Download         Length: 294 bp        

>NTDB_id=515543 JAV55_RS12970 WP_003183466.1 2530233..2530526(-) (comGC) [Bacillus licheniformis strain H2]
GTGAATGAAAAGGGATTTACACTGATAGAAATGTTAGTCGTCATGCTCGTTATCTCCATCCTGCTGTTGATCACCATTCC
GAATGTGACCAAGCATAACCAAAGCATCCAAAAGAAAGGATGCGAAGGATTAATCAATATGGTTCAAGCGCAGATCACGG
CCTATCAGATGGATCATGACGGGAAAACGCCGAACAGGGCGGAGCTTGAATCTGAAGGTTACATAAAAAAGAACTTAAAG
TGTCCGAATGGGAAAGCAATTAAAATTTCAAACGGCAAAGCACAGGCTGATTGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Bacillus subtilis subsp. subtilis str. 168

68.041

100

0.68
  comGC Staphylococcus aureus MW2

44.211

97.938

0.433
  comGC Staphylococcus aureus N315

44.211

97.938

0.433