Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   SSUST1_RS01225 Genome accession   NC_017950
Coordinates   223354..224067 (+) Length   237 a.a.
NCBI ID   WP_012774930.1    Uniprot ID   A0A142UPI2
Organism   Streptococcus suis ST1     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 218354..229067
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SSUST1_RS10835 - 218392..219006 (+) 615 Protein_203 peptidoglycan-binding protein -
  SSUST1_RS01215 (SSUST1_0227) treC 219420..221045 (-) 1626 WP_014735356.1 alpha,alpha-phosphotrehalase -
  SSUST1_RS01220 (SSUST1_0228) treP 221126..223120 (-) 1995 WP_014735357.1 PTS system trehalose-specific EIIBC component -
  SSUST1_RS01225 (SSUST1_0229) treR 223354..224067 (+) 714 WP_012774930.1 trehalose operon repressor Regulator
  SSUST1_RS01230 (SSUST1_0230) - 224125..224436 (+) 312 WP_014735358.1 hypothetical protein -
  SSUST1_RS01235 (SSUST1_0231) - 224433..224981 (+) 549 WP_002935945.1 CvpA family protein -
  SSUST1_RS01240 (SSUST1_0232) - 225473..227806 (+) 2334 WP_014735359.1 endonuclease MutS2 -
  SSUST1_RS01245 (SSUST1_0233) - 227830..228542 (+) 713 Protein_210 GNAT family N-acetyltransferase -
  SSUST1_RS01250 (SSUST1_0235) trxA 228753..229067 (+) 315 WP_014735360.1 thioredoxin -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 27200.07 Da        Isoelectric Point: 6.7422

>NTDB_id=51462 SSUST1_RS01225 WP_012774930.1 223354..224067(+) (treR) [Streptococcus suis ST1]
MKKYQEIYNDLKEKIRTNVYPAESSLPTEQQLQEIYGVSRDTVRKALAILTEGGLIQKVQGRGSMVLKQEILNFPVSGLT
SYQELTNVLQLSTKTDVVSLDMITVNSSLSHLTGFEPYSKVWKVVRTRSIDGKVSVVDTDYLAVDVVPELTTAIAEKSIY
EYLENKLGLDIAYAQKEITVEPTNREERELMQSKDDYLVLIKSRVYLGDTQQFQYTESKHKIDKFRFVDFARRKHSL

Nucleotide


Download         Length: 714 bp        

>NTDB_id=51462 SSUST1_RS01225 WP_012774930.1 223354..224067(+) (treR) [Streptococcus suis ST1]
ATGAAAAAATACCAAGAAATTTATAATGACTTAAAAGAAAAAATACGTACAAATGTTTATCCGGCAGAAAGCTCCCTACC
GACAGAACAGCAGCTTCAGGAAATCTATGGTGTTAGTCGTGATACGGTTCGTAAGGCGTTGGCGATTTTGACTGAGGGAG
GCTTGATTCAAAAAGTGCAAGGGCGTGGTTCAATGGTCCTTAAGCAAGAAATTCTCAATTTCCCAGTTTCAGGTTTAACT
TCCTATCAGGAATTGACAAATGTTCTCCAGCTTTCTACCAAGACAGATGTTGTCAGCTTAGATATGATTACCGTTAATAG
TAGCCTTTCGCACTTGACAGGCTTTGAGCCGTATAGCAAGGTGTGGAAAGTTGTCCGTACACGTTCGATTGACGGTAAGG
TCTCCGTTGTGGATACAGATTATCTTGCTGTCGATGTCGTGCCAGAGTTGACAACTGCTATTGCTGAAAAATCCATCTAC
GAATACCTAGAAAATAAGTTAGGCCTTGATATTGCTTATGCACAAAAAGAGATTACGGTAGAGCCGACCAATCGAGAAGA
GCGTGAGCTAATGCAATCGAAGGATGATTATTTGGTCTTGATTAAATCTCGTGTCTATCTCGGTGATACCCAGCAATTCC
AATATACAGAAAGCAAGCATAAAATTGATAAATTCCGCTTTGTAGATTTTGCTCGTAGAAAGCATTCTTTATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, gntR family (GntR)

(3-66)

UTRA domain (UTRA)

(91-226)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A142UPI2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

52.137

98.734

0.515

Multiple sequence alignment